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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTTCCTCAAAGCTTGTTGGAGGTGTTACCAATCTTGTGAGTGGAGCATCGAGCAGCACCGTGGCAAACCGAGACCTTCCAGTATCTACAGACAACCAGgtcaaagatttatgcaaaaccctcttttcttaaaatccttcaaaagaaaaagtttattgtctcttataccaaaagattgtaattctcatgatcatgttttaacaattgaatatatgtgttttgcag

Basic information

species Arabidopsis thaliana
transcript AT2G30930.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86072643|gb|DR368400.1|DR368400
EST:     CGAGCAGCACCGTGGCAAACCGNGACCTTCCAGTATCTACAGACAACCAG                         CCTCTGCTAGCGTCTGGCGAAACGACGCCGTGGTGGAAGAATTGTTGTGGA
genomic: CGAGCAGCACCGTGGCAAACCGAGACCTTCCAGTATCTACAGACAACCAGgtcaaagatt ... tgttttgcagCCTCTGCTAGCGTCTGGTGAAAAGACGCCGTGGTGGAAGAATTGTTGTGGA
EST: gi|86072644|gb|DR368401.1|DR368401
EST:     CGAGCAGCACCGTGGCAAACCGAGACCTTCCAGTATCTACAGACAACCAG                         CCTCTGCTAGCGTCTGGCGAAACGACGCCGTGGTGGAAGAATTGTTGTGGA
genomic: CGAGCAGCACCGTGGCAAACCGAGACCTTCCAGTATCTACAGACAACCAGgtcaaagatt ... tgttttgcagCCTCTGCTAGCGTCTGGTGAAAAGACGCCGTGGTGGAAGAATTGTTGTGGA
EST: gi|125202285|gb|EL217239.1|EL217239
EST:     ATCTACAGACAACCAG                         CCTCTGCTAGCGTCTGGTG-AAAGACGCCGTGGTGGAAGAATTGTTGTGGA
genomic: ATCTACAGACAACCAGgtcaaagatt ... tgttttgcagCCTCTGCTAGCGTCTGGTGAAAAGACGCCGTGGTGGAAGAATTGTTGTGGA
EST: gi|125165239|gb|EL191609.1|EL191609
EST:     CGAGCAGCACCGTGGCAAACCGAGACCTTCCAGTATCTACAGACAACCAG                         CCTCTGCTAGCGTCTGGTGAAAA
genomic: CGAGCAGCACCGTGGCAAACCGAGACCTTCCAGTATCTACAGACAACCAGgtcaaagatt ... tgttttgcagCCTCTGCTAGCGTCTGGTGAAAA
EST: gi|125138014|gb|EL177623.1|EL177623
EST:     CCGTGGCAAACCGAGACCTTCCAGTATCTACAGACAACCAG                         CCTCTGCTAGCGTCTGGTGAAAAGACGCCGTGGTGGAAGAATTGTTGTGGA
genomic: CCGTGGCAAACCGAGACCTTCCAGTATCTACAGACAACCAGgtcaaagatt ... tgttttgcagCCTCTGCTAGCGTCTGGTGAAAAGACGCCGTGGTGGAAGAATTGTTGTGGA
EST: gi|125012769|gb|EL085038.1|EL085038
EST:     CGAGCAGCACCGTGGCAAACCGAGACCTTCCAGTATCTACAGACAACCAG                         CCTCTGCTAGCGTCTGGTGAAAAGACGCCGTGGTGGAAG
genomic: CGAGCAGCACCGTGGCAAACCGAGACCTTCCAGTATCTACAGACAACCAGgtcaaagatt ... tgttttgcagCCTCTGCTAGCGTCTGGTGAAAAGACGCCGTGGTGGAAG
EST: gi|124862463|gb|EH946900.1|EH946900
EST:     TGGCAAACCGAGACCTTCCAGTATCTACAGACAACCAG                         CCTCTGCTAGCGTCTGGTGAAAAGACGCCGTGGTGGAAGAATTGTTGTGGA
genomic: TGGCAAACCGAGACCTTCCAGTATCTACAGACAACCAGgtcaaagatt ... tgttttgcagCCTCTGCTAGCGTCTGGTGAAAAGACGCCGTGGTGGAAGAATTGTTGTGGA
EST: gi|124713040|gb|EH804442.1|EH804442
EST:     CGAGCAGCACCGTGGCAAACCGAGACCTTCCAGTATCTACAGACAACCAG                         CCTCTGCTAGCGTCTGGTGAAAAGACGCCGTGGTGG
genomic: CGAGCAGCACCGTGGCAAACCGAGACCTTCCAGTATCTACAGACAACCAGgtcaaagatt ... tgttttgcagCCTCTGCTAGCGTCTGGTGAAAAGACGCCGTGGTGG
EST: gi|86072646|gb|DR368403.1|DR368403
EST:     CGAGCAGCACCGTGGCAAACCGAGACCTTCCAGTATCTACAGACAACCAG                         CCTCTGCTAGCGTCTGGCGAAACGACGCCGTGGTGGAAGA
genomic: CGAGCAGCACCGTGGCAAACCGAGACCTTCCAGTATCTACAGACAACCAGgtcaaagatt ... tgttttgcagCCTCTGCTAGCGTCTGGTGAAAAGACGCCGTGGTGGAAGA
EST: gi|86072645|gb|DR368402.1|DR368402
EST:     CGAGCAGCACCGTGGCAAACCGAGACCTTCCAGTATCTACAGACAACCAG                         CCTCTGCTAGCGTCTGGCGAAACGACGCCGTGGTGGAAGAATTGTTGTGGA
genomic: CGAGCAGCACCGTGGCAAACCGAGACCTTCCAGTATCTACAGACAACCAGgtcaaagatt ... tgttttgcagCCTCTGCTAGCGTCTGGTGAAAAGACGCCGTGGTGGAAGAATTGTTGTGGA
EST: gi|86072649|gb|DR368406.1|DR368406
EST:     CGAGCAGCACCGTGGCAAACCGAGACCTTCCAGTATCTACAGACAACCAG                         CCTCTGCTAGCGTCTGGCGAAA
genomic: CGAGCAGCACCGTGGCAAACCGAGACCTTCCAGTATCTACAGACAACCAGgtcaaagatt ... tgttttgcagCCTCTGCTAGCGTCTGGTGAAA
EST: gi|124900049|gb|EH974667.1|EH974667
EST:     CGAGCAGCACCGTGGCAAACCGAGACCTTCCAGTATCTACAGACAACCAG                         CCTCTGCTAGCGTCTGGTGAAAAGACGCCG
genomic: CGAGCAGCACCGTGGCAAACCGAGACCTTCCAGTATCTACAGACAACCAGgtcaaagatt ... tgttttgcagCCTCTGCTAGCGTCTGGTGAAAAGACGCCG
EST: gi|86072648|gb|DR368405.1|DR368405
EST:     CGAGCAGCACCGTGGCAAACCGAGACCTTCCAGTATCTACAGACAACCAG                         CCTCTGCTAGCGTCTGGCGAAACGACGCCGTGGTGGAAGAATTGTTGTGGA
genomic: CGAGCAGCACCGTGGCAAACCGAGACCTTCCAGTATCTACAGACAACCAGgtcaaagatt ... tgttttgcagCCTCTGCTAGCGTCTGGTGAAAAGACGCCGTGGTGGAAGAATTGTTGTGGA
EST: gi|124960870|gb|EL035505.1|EL035505
EST:     TATCTACAGACAACCAG                         CCTCTGCTAGCGTCTGGTGAAAAGACGCCGTGGTGGAAGAATTGTTGTGGA
genomic: TATCTACAGACAACCAGgtcaaagatt ... tgttttgcagCCTCTGCTAGCGTCTGGTGAAAAGACGCCGTGGTGGAAGAATTGTTGTGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TATTTCCTCAAAGCTTGTTGGAGGTGTTACCAATCTTGTGAGTGGAGCATCGAGCAGCACCGTGGCAAACCGAGACCTTCCAGTATCTACAGACAACCAGgtcaaagatttatgcaaaaccctcttttcttaaaatccttcaaaagaaaaagtttattgtctcttataccaaaagattgtaattctcatgatcatgttttaacaattgaatatatgtgttttgcag

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