Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125292254|gb|EL306339.1|EL306339EST: ACAAAGCGTCTGGTGTGTCTACACAG GCTAAGGATGCAGTGGACAAAGCTTTTTCTAGAGGTATAGAAGGAGCCAAA
genomic: ACAAAGCGTCTGGTGTGTCTACACAGgtcggtattg ... atttgaatagGCTAAGGATGCAGTGGACAAAGCTTTTTCTAGAGGTATAGAAGGAGCCAAA
EST:
gi|86072643|gb|DR368400.1|DR368400EST: AGACCGAGGCTGCAG-CGCACCAGACAAAGCGTCTGGTGTGTCTACACAG GCTAAGGATGCAGTGGACAAAGCTTTTTCTAGAGGTATAGAAGGAGCCAAA
genomic: AGACCGAGGCTGCAGCCGCACCAGACAAAGCGTCTGGTGTGTCTACACAGgtcggtattg ... atttgaatagGCTAAGGATGCAGTGGACAAAGCTTTTTCTAGAGGTATAGAAGGAGCCAAA
EST:
gi|124747274|gb|EH837418.1|EH837418EST: CCGCACCAGACAAAGCGTCTGGTGTGTCTACACAG GCTAAGGATGCAGTGGACAAAGCTTTTTCTAGAGGTAAATAGAAGGAGCCA
genomic: CCGCACCAGACAAAGCGTCTGGTGTGTCTACACAGgtcggtattg ... atttgaatagGCTAAGGATGCAGTGGACAAAGCTTTTTCTAGAGGTA--TAGAAGGAGCCA
EST:
gi|86072644|gb|DR368401.1|DR368401EST: AGACCGAGGCTGCAGCCGCACCAGACAAAGCGTCTGGTGTGTCTACACAG GCTAAGGATGCAGTGGACAAAGCTTTTTCTAGAGGTATAGAAGGAGCCAAA
genomic: AGACCGAGGCTGCAGCCGCACCAGACAAAGCGTCTGGTGTGTCTACACAGgtcggtattg ... atttgaatagGCTAAGGATGCAGTGGACAAAGCTTTTTCTAGAGGTATAGAAGGAGCCAAA
EST:
gi|124723563|gb|EH814965.1|EH814965EST: AGACCGAGGCTGCAGCCGCACCAGACAAAGCGTCTGGTGTGTCTACACAG GCTAAGGATGCAGTGGACAAAG
genomic: AGACCGAGGCTGCAGCCGCACCAGACAAAGCGTCTGGTGTGTCTACACAGgtcggtattg ... atttgaatagGCTAAGGATGCAGTGGACAAAG
EST:
gi|86072646|gb|DR368403.1|DR368403EST: AGACCGAGGCTGCAGCCGCACCAGACAAAGCGTCTGGTGTGTCTACACAG GCTAAGGATGCAGTGGACAAAGCTTTTTCTAGAGGTATAGAAGGAGCCAAA
genomic: AGACCGAGGCTGCAGCCGCACCAGACAAAGCGTCTGGTGTGTCTACACAGgtcggtattg ... atttgaatagGCTAAGGATGCAGTGGACAAAGCTTTTTCTAGAGGTATAGAAGGAGCCAAA
EST:
gi|86072645|gb|DR368402.1|DR368402EST: AGACCGAGGCTGCAGCCGCACCAGACAAAGCGTCTGGTGTGTCTACACAG GCTAAGGATGCAGTGGACAAAGCTTTTTCTAGAGGTATAGAAGGAGCCAAA
genomic: AGACCGAGGCTGCAGCCGCACCAGACAAAGCGTCTGGTGTGTCTACACAGgtcggtattg ... atttgaatagGCTAAGGATGCAGTGGACAAAGCTTTTTCTAGAGGTATAGAAGGAGCCAAA
EST:
gi|86072649|gb|DR368406.1|DR368406EST: AGACCGAGGCTGCAGCCGCACCAGACAAAGCGTCTGGTGTGTCTACACAG GCTAAGGATGCAGTGGACAAAGCTTTTTCTAGAGGTATAGAAGGAGCCAAA
genomic: AGACCGAGGCTGCAGCCGCACCAGACAAAGCGTCTGGTGTGTCTACACAGgtcggtattg ... atttgaatagGCTAAGGATGCAGTGGACAAAGCTTTTTCTAGAGGTATAGAAGGAGCCAAA
EST:
gi|86072641|gb|DR368398.1|DR368398EST: AGACCGAGGCTGCAGCCGCACCAGACAAAGCGTCTGGTGTGTCTACACAG GCTAAGGATGCAGTGGACAAAGCTTTTTCTAGAGGTATAGAAGGAGCCAAA
genomic: AGACCGAGGCTGCAGCCGCACCAGACAAAGCGTCTGGTGTGTCTACACAGgtcggtattg ... atttgaatagGCTAAGGATGCAGTGGACAAAGCTTTTTCTAGAGGTATAGAAGGAGCCAAA
EST:
gi|86072648|gb|DR368405.1|DR368405EST: AGACCGAGGCTGCAGCCGCACCAGACAAAGCGTCTGGTGTGTCTACACAG GCTAAGGATGCAGTGGACAAAGCTTTTTCTAGAGGTATAGAAGGAGCCAAA
genomic: AGACCGAGGCTGCAGCCGCACCAGACAAAGCGTCTGGTGTGTCTACACAGgtcggtattg ... atttgaatagGCTAAGGATGCAGTGGACAAAGCTTTTTCTAGAGGTATAGAAGGAGCCAAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acatgttttttatcgtcccagcaaaactaacaagacacgtttttaatttgaatagGCTAAGGATGCAGTGGACAAAGCTTTTTCTAGAGGTATAGAAGGAGCCAAATCTTTGCTTCAAACTTTCGAAGCGAAGAGCAGCGATATTTCCTCAAAGC
tttttaatttgaata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcggtattggtcacaaacttttacatgttttttatcgtcccagcaaaactaacaagacacgtttttaatttgaatagGCTAAGGATGCAGTGGACAAAGCTTTTTCTAGAGGTATAGAAGGAGCCAAATCTTTGCTTCAAACTTTCGAAGCGAAGAGCAGCGATATTTCCTCAAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG