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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTCTAACTGACGCCGAGACAACCGTTGCAGCATCTGTTGAAACGGTCAAGACCGAGGCTGCAGCCGCACCAGACAAAGCGTCTGGTGTGTCTACACAGgtcggtattggtcacaaacttttacatgttttttatcgtcccagcaaaactaacaagacacgtttttaatttgaatag

Basic information

species Arabidopsis thaliana
transcript AT2G30930.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125292254|gb|EL306339.1|EL306339
EST:     ACAAAGCGTCTGGTGTGTCTACACAG                         GCTAAGGATGCAGTGGACAAAGCTTTTTCTAGAGGTATAGAAGGAGCCAAA
genomic: ACAAAGCGTCTGGTGTGTCTACACAGgtcggtattg ... atttgaatagGCTAAGGATGCAGTGGACAAAGCTTTTTCTAGAGGTATAGAAGGAGCCAAA
EST: gi|86072643|gb|DR368400.1|DR368400
EST:     AGACCGAGGCTGCAG-CGCACCAGACAAAGCGTCTGGTGTGTCTACACAG                         GCTAAGGATGCAGTGGACAAAGCTTTTTCTAGAGGTATAGAAGGAGCCAAA
genomic: AGACCGAGGCTGCAGCCGCACCAGACAAAGCGTCTGGTGTGTCTACACAGgtcggtattg ... atttgaatagGCTAAGGATGCAGTGGACAAAGCTTTTTCTAGAGGTATAGAAGGAGCCAAA
EST: gi|124747274|gb|EH837418.1|EH837418
EST:     CCGCACCAGACAAAGCGTCTGGTGTGTCTACACAG                         GCTAAGGATGCAGTGGACAAAGCTTTTTCTAGAGGTAAATAGAAGGAGCCA
genomic: CCGCACCAGACAAAGCGTCTGGTGTGTCTACACAGgtcggtattg ... atttgaatagGCTAAGGATGCAGTGGACAAAGCTTTTTCTAGAGGTA--TAGAAGGAGCCA
EST: gi|86072644|gb|DR368401.1|DR368401
EST:     AGACCGAGGCTGCAGCCGCACCAGACAAAGCGTCTGGTGTGTCTACACAG                         GCTAAGGATGCAGTGGACAAAGCTTTTTCTAGAGGTATAGAAGGAGCCAAA
genomic: AGACCGAGGCTGCAGCCGCACCAGACAAAGCGTCTGGTGTGTCTACACAGgtcggtattg ... atttgaatagGCTAAGGATGCAGTGGACAAAGCTTTTTCTAGAGGTATAGAAGGAGCCAAA
EST: gi|124723563|gb|EH814965.1|EH814965
EST:     AGACCGAGGCTGCAGCCGCACCAGACAAAGCGTCTGGTGTGTCTACACAG                         GCTAAGGATGCAGTGGACAAAG
genomic: AGACCGAGGCTGCAGCCGCACCAGACAAAGCGTCTGGTGTGTCTACACAGgtcggtattg ... atttgaatagGCTAAGGATGCAGTGGACAAAG
EST: gi|86072646|gb|DR368403.1|DR368403
EST:     AGACCGAGGCTGCAGCCGCACCAGACAAAGCGTCTGGTGTGTCTACACAG                         GCTAAGGATGCAGTGGACAAAGCTTTTTCTAGAGGTATAGAAGGAGCCAAA
genomic: AGACCGAGGCTGCAGCCGCACCAGACAAAGCGTCTGGTGTGTCTACACAGgtcggtattg ... atttgaatagGCTAAGGATGCAGTGGACAAAGCTTTTTCTAGAGGTATAGAAGGAGCCAAA
EST: gi|86072645|gb|DR368402.1|DR368402
EST:     AGACCGAGGCTGCAGCCGCACCAGACAAAGCGTCTGGTGTGTCTACACAG                         GCTAAGGATGCAGTGGACAAAGCTTTTTCTAGAGGTATAGAAGGAGCCAAA
genomic: AGACCGAGGCTGCAGCCGCACCAGACAAAGCGTCTGGTGTGTCTACACAGgtcggtattg ... atttgaatagGCTAAGGATGCAGTGGACAAAGCTTTTTCTAGAGGTATAGAAGGAGCCAAA
EST: gi|86072649|gb|DR368406.1|DR368406
EST:     AGACCGAGGCTGCAGCCGCACCAGACAAAGCGTCTGGTGTGTCTACACAG                         GCTAAGGATGCAGTGGACAAAGCTTTTTCTAGAGGTATAGAAGGAGCCAAA
genomic: AGACCGAGGCTGCAGCCGCACCAGACAAAGCGTCTGGTGTGTCTACACAGgtcggtattg ... atttgaatagGCTAAGGATGCAGTGGACAAAGCTTTTTCTAGAGGTATAGAAGGAGCCAAA
EST: gi|86072641|gb|DR368398.1|DR368398
EST:     AGACCGAGGCTGCAGCCGCACCAGACAAAGCGTCTGGTGTGTCTACACAG                         GCTAAGGATGCAGTGGACAAAGCTTTTTCTAGAGGTATAGAAGGAGCCAAA
genomic: AGACCGAGGCTGCAGCCGCACCAGACAAAGCGTCTGGTGTGTCTACACAGgtcggtattg ... atttgaatagGCTAAGGATGCAGTGGACAAAGCTTTTTCTAGAGGTATAGAAGGAGCCAAA
EST: gi|86072648|gb|DR368405.1|DR368405
EST:     AGACCGAGGCTGCAGCCGCACCAGACAAAGCGTCTGGTGTGTCTACACAG                         GCTAAGGATGCAGTGGACAAAGCTTTTTCTAGAGGTATAGAAGGAGCCAAA
genomic: AGACCGAGGCTGCAGCCGCACCAGACAAAGCGTCTGGTGTGTCTACACAGgtcggtattg ... atttgaatagGCTAAGGATGCAGTGGACAAAGCTTTTTCTAGAGGTATAGAAGGAGCCAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CACTCTAACTGACGCCGAGACAACCGTTGCAGCATCTGTTGAAACGGTCAAGACCGAGGCTGCAGCCGCACCAGACAAAGCGTCTGGTGTGTCTACACAGgtcggtattggtcacaaacttttacatgttttttatcgtcccagcaaaactaacaagacacgtttttaatttgaatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG