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gtaaataccatttctagatctctttgtttattaccgttattcgtcaatatggtcaaacttttactcaattgtgtgatgtttttggtataattcagGTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAAGTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGAT
species | Arabidopsis thaliana |
transcript | AT2G24490.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAAC GTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAAEST: gi|86033702|gb|DR329455.1|DR329455
genomic: CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAACgtaaatacca ... tataattcagGTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAA
EST: CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAAC GTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAAEST: gi|86033704|gb|DR329457.1|DR329457
genomic: CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAACgtaaatacca ... tataattcagGTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAA
EST: CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAAC GTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAAEST: gi|86033703|gb|DR329456.1|DR329456
genomic: CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAACgtaaatacca ... tataattcagGTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAA
EST: CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAAC GTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAAEST: gi|86033706|gb|DR329459.1|DR329459
genomic: CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAACgtaaatacca ... tataattcagGTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAA
EST: CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAAC GTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAAEST: gi|86033710|gb|DR329463.1|DR329463
genomic: CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAACgtaaatacca ... tataattcagGTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAA
EST: CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAAC GTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAAEST: gi|86033712|gb|DR329465.1|DR329465
genomic: CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAACgtaaatacca ... tataattcagGTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAA
EST: CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAAC GTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAAEST: gi|86033709|gb|DR329462.1|DR329462
genomic: CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAACgtaaatacca ... tataattcagGTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAA
EST: CCAGNGGNGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAAC GTTTCACTTGTTGGATTAGTGEST: gi|86033705|gb|DR329458.1|DR329458
genomic: CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAACgtaaatacca ... tataattcagGTTTCACTTGTTGGATTAGTG
EST: CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAAC GTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAAEST: gi|86033701|gb|DR329454.1|DR329454
genomic: CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAACgtaaatacca ... tataattcagGTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAA
EST: CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAAC GTTTCACTTGTTGGATTAGTGTGTGACAAANATGAATCTAAAGTCACAGAAEST: gi|86033707|gb|DR329460.1|DR329460
genomic: CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAACgtaaatacca ... tataattcagGTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAA
EST: CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAAC GTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAAEST: gi|19877547|gb|AU238378.1|AU238378
genomic: CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAACgtaaatacca ... tataattcagGTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAA
EST: CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAAC GTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAAEST: gi|86033711|gb|DR329464.1|DR329464
genomic: CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAACgtaaatacca ... tataattcagGTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAA
EST: CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAAC GTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAA
genomic: CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAACgtaaatacca ... tataattcagGTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAA
tcgtcaatatggtcaaacttttactcaattgtgtgatgtttttggtataattcagGTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAAGTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGAT
tttttggtataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaataccatttctagatctctttgtttattaccgttattcgtcaatatggtcaaacttttactcaattgtgtgatgtttttggtataattcagGTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAAGTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA