1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aagtgaaaaccctaaacacacttccgaaacaagctaagtttacaaagtcactaaagaccacaaaataaaaccctaattagactctgctatttgtcaacagGTTTGCGACAGAGAGGGCAAGAGTTATTATGACCAATCACCCACTTGGTGACACATCCTTCATGATAACAATGCTTACAATAAGGCATCTGGCAATAATT
species | Arabidopsis thaliana |
transcript | AT2G24490.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGTCATGCTTAATTCTGGTGTTGGATTGTTTCCTTGTTTCTTTCAATTTG GTTTGCGACAGAGAGGGTAAGAGTTATTATGACCAATCACCCACTTGGTGAEST: gi|116392125|gb|EG434717.1|EG434717
genomic: TGTCATGCTTAATTCTGGTGTTGGATTGTTTCCTTGTTTCTTTCAATTTGgtaagccaac ... ttgtcaacagGTTTGCGACAGAGAGGGCAAGAGTTATTATGACCAATCACCCACTTGGTGA
EST: TGTCATGCTTAATTCTGGTGTTGGATTGTTTCCTTGTTTCTTTCAATTTG GTTTGCGACAGAGAGGGTAAGAGTTATTATGACCAATCACCCACTTGGTGAEST: gi|116392122|gb|EG434714.1|EG434714
genomic: TGTCATGCTTAATTCTGGTGTTGGATTGTTTCCTTGTTTCTTTCAATTTGgtaagccaac ... ttgtcaacagGTTTGCGACAGAGAGGGCAAGAGTTATTATGACCAATCACCCACTTGGTGA
EST: TGTCATGCTTAATTCTGGTGTTGGATTGTTTCCTTGTTTCTTTCAATTTG GTTTGCGACAGAGAGGGTAAGAGTTATTATGACCAATCACCCACTTGGTGA
genomic: TGTCATGCTTAATTCTGGTGTTGGATTGTTTCCTTGTTTCTTTCAATTTGgtaagccaac ... ttgtcaacagGTTTGCGACAGAGAGGGCAAGAGTTATTATGACCAATCACCCACTTGGTGA
agtcactaaagaccacaaaataaaaccctaattagactctgctatttgtcaacagGTTTGCGACAGAGAGGGCAAGAGTTATTATGACCAATCACCCACTTGGTGACACATCCTTCATGATAACAATGCTTACAATAAGGCATCTGGCAATAATT
acaaaataaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtgaaaaccctaaacacacttccgaaacaagctaagtttacaaagtcactaaagaccacaaaataaaaccctaattagactctgctatttgtcaacagGTTTGCGACAGAGAGGGCAAGAGTTATTATGACCAATCACCCACTTGGTGACACATCCTTCATGATAACAATGCTTACAATAAGGCATCTGGCAATAATT
- - -aaaaccc
- - - - - - -aaacaca
- - - - - - - - - - - - -gaaacaa
- - - - - - - - - - - - - - - - - - - - -acaaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - -aagacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaaa