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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgactttttgtcaataagttgtttgtaccgtgatataatcatatgatctgatgatttggttgattgcaacatttcttttattaccatttttcagGCGTGTCTTATAGCAGACATGGTGCAATATTTTGTTGACGCCAAACTTGAGTTTGATGCCTCTAACATCTACAATGATGTCAATCGTGCTATTCAACATG

Basic information

species Arabidopsis thaliana
transcript AT2G23890.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164046413|gb|ES182119.1|ES182119
EST:     CTAACGCGAGAGGTTTGGTGGGATTGATGGATTTCTTCTGTTTTAGCGAG                         GCGTGTCTTATAGCAGACATGG
genomic: C-AA-GCGAGAGGTTTGGTGGGATTGATGGATTTCTTCTGTTTTAGCGAGgtgacttttt ... catttttcagGCGTGTCTTATAGCAGACATGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catatgatctgatgatttggttgattgcaacatttcttttattaccatttttcagGCGTGTCTTATAGCAGACATGGTGCAATATTTTGTTGACGCCAAACTTGAGTTTGATGCCTCTAACATCTACAATGATGTCAATCGTGCTATTCAACATG
                                tttcttttattaccat  CT-rich tract
                               atttcttttattacca  TA-rich tract