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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggtattatttgctattgattttggttttgtgattgttcttcttagtcactgatgatgatactttgtgtagGGATATATGTGAATAAGAATCTGAGATTGGATAATATACAAGTTTATGGATTTGATTATGATTACACTTTGGCACATTACTCTTCTCACTTACAGAGTTT

Basic information

species Arabidopsis thaliana
transcript AT2G23890.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G23890.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA17G07760.1 (Glycine max), 3'ss of exon 3
---------------------------------gtgaggtattatttgctattgattttggt--tttgtgattgttcttcttagtcactgatgatgatactttgtgtagGGATATATGTGAATAAGAATCTGAGATTGGATAATATACAAGTTTATGGATTTGATTATGATTACACTTTGGCACATTACTCTTCTCACTTACAGAGTTT
                                  |||  |   |||   | |  || ||| |  ||| |  || || || ||  ||  |  |     || |   | |||| |||||||||||||||||  ||||||||||  |  | ||||||||||| || || ||||||||||| ||||| |||||||| ||| | ||||||| |||
gttcgttagatgatcggttcgcttcaacttgttttgaaattgcattgtttctgaatgttgatcgtttttttttttttttttttatctttcttatgtgtattggat-tagGCATATATGTGAATAAGAACGTGAGATTGGACCAATTGCAAGTTTATGGGTTCGACTATGATTACACATTGGCGCATTACTCGTCTGATTTACAGACTTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19874996|gb|AU235827.1|AU235827
EST:     TCTTAATATCCCTGAAGCTATTAATAGTATGCCGAAGATGAATCCTCAAG                         GGATATATGTGAATAAGAATCTGAGATTGGATAATATACAAGTTTATGGAT
genomic: TCTTAATATCCCTGAAGCTATTAATAGTATGCCGAAGATGAATCCTCAAGgtgaggtatt ... ctttgtgtagGGATATATGTGAATAAGAATCTGAGATTGGATAATATACAAGTTTATGGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgattttggttttgtgattgttcttcttagtcactgatgatgatactttgtgtagGGATATATGTGAATAAGAATCTGAGATTGGATAATATACAAGTTTATGGATTTGATTATGATTACACTTTGGCACATTACTCTTCTCACTTACAGAGTTT
                               cactgat  putative branch site (score: 3)
                                          atacttt  TA-rich tract