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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatctctttctatctctctcatttctatttattcgcgatcggtggtgatgatgaaaatgatgatcgagttcgttgtaattacagAGAGGAAGATTTTCTTCCGATCAAATCCGAAATGGATTTCTAAGAAACTTCCGTGGATTCGCCACCGTAACTTCGTCGGAACCGGCCTTAGCCAATCTGG

Basic information

species Arabidopsis thaliana
transcript AT2G23890.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19874996|gb|AU235827.1|AU235827
EST:     CTATGACTTCCTCTCGCCGTCTTCTTCTTCCTCTCGGAGCATCGCTCACT                         AGAGGAAGATTTTCTTCCGATCAAATCCGAAATGGATTTCTAAGAAACTTC
genomic: CTATGACTTCCTCTCGCCGTCTTCTTCTTCCTCTCGGAGCATCGCTCACTgtaaatctct ... gtaattacagAGAGGAAGATTTTCTTCCGATCAAATCCGAAATGGATTTCTAAGAAACTTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattcgcgatcggtggtgatgatgaaaatgatgatcgagttcgttgtaattacagAGAGGAAGATTTTCTTCCGATCAAATCCGAAATGGATTTCTAAGAAACTTCCGTGGATTCGCCACCGTAACTTCGTCGGAACCGGCCTTAGCCAATCTGG
                                           ttgtaatta  TA-rich tract