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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACATTTCCGTCTGGAGCTGAGTGGGACAAATTGAAAGAGAAAGGCTTCTCACAAAGGATTGGAATGCAGTACCACTGGAAAAATCGTGATTATAAAAAgtaattgaagttagttgccagtatattagttcttaacaatgactggattggaagtagttgctattatattttgttcatttttttttttatctctaatacttcag

Basic information

species Arabidopsis thaliana
transcript AT2G23390.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G23390.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA17G00490.2 (Glycine max), 5'ss of exon 2
TTACATTTCCGTCTGGAGCTGAGTGGGACAAATTGAAAGAGAAAGGCTTCTCACAAAGGATTGGAATGCAGTACCACTGGAAAAATCGTGATTATAAAAAgtaattgaagttagttgccagtatattagttcttaacaatgactggattggaagtagttgctattatattttgttcatttttttttttatctctaatacttcag
|||| ||||| |||| |  ||||||  ||||  | |  || |||||||||   |  ||||||||||||||||||||||||||||| ||| | || ||||||| | | |      ||   ||    ||   | ||  || |       ||   |    | ||| |    ||||| |  ||| | ||   |               
TTACTTTTCCCTCTGAAAATGAGTGCCACAAGCTCACTGAAAAAGGCTTCCTGCCCAGGATTGGAATGCAGTACCACTGGAAAAACCGTAACTACAAAAAgtgactcatccatcttattagctctttctattttggcagtcttgctgtttttacatatagctttagacttttgctgttttatgttgccag--------------

upper sequence: AT2G23390.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA07G40290.1 (Glycine max), 5'ss of exon 2
TTACATTTCCGTCTGGAGCTGAGTGGGACAAATTGAAAGAGAAAGGCTTCTCACAAAGGATTGGAATGCAGTACCACTGGAAAAATCGTGATTATAAAAAgtaattgaagttagttgccagtatattagttcttaa--caatgactggattggaagtagttgctattatattttgtt---catttttttttttatctctaatacttcag--------
|||| ||||| |||| |  ||||||| ||||  | |  ||||||||||||   |  ||||||||||||||||||||||||||||| ||| | || ||||||| | | |         |||  ||||||| |  ||       |  |||| ||  | |  |  | ||   |||    |   ||| |   |||  |  | |  |  || |         
TTACTTTTCCCTCTGAAAATGAGTGGCACAAGCTCACTGAGAAAGGCTTCCTCCCCAGGATTGGAATGCAGTACCACTGGAAAAACCGTAACTACAAAAAgtgagtcat--------ccatgatattagattctactttgggggatggactgctactgctacccatcccattcccattaccatatagctttagacttttgctgttttatgttggcag