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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCGGTTACTGCTATGTTTTGGAAGTCCAATAAGCCTGCGGAAGTAAAGGAATTCGATATATCACTTAGAGATTACACTCTAACTGAATCAAACATTGAGgtatttcaatctctttgttgattattttttatgtaaacagctttcagacgctgttagctacgaacttttcgtgccaaattattcgctttaacatttcaattttctttgttgattttagttgataaatcatcagttctctaatagtggtttcgtttcgagtttag

Basic information

species Arabidopsis thaliana
transcript AT2G23390.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47828309|gb|CK117993.1|CK117993
EST:     AATTCGATATATCACTTAGAGATTACACTCTAACTGAATCAAACATTGAG                         GAAGCTTTGGAAAACAAGCCGAAGCAAAAGGTGATTTCACTATCAGTTGTT
genomic: AATTCGATATATCACTTAGAGATTACACTCTAACTGAATCAAACATTGAGgtatttcaat ... tcgagtttagGAAGCTTTGGAAAACAAGCCGAAGCAAAAGGTGATTTCACTATCAGTTGTT
EST: gi|163969838|gb|ES058322.1|ES058322
EST:     AATTCGATATATCACTTAGAGATTACACTCTAACTGAATCAAACATTGAG                         GAAGCTTTGGAAA
genomic: AATTCGATATATCACTTAGAGATTACACTCTAACTGAATCAAACATTGAGgtatttcaat ... tcgagtttagGAAGCTTTGGAAA
EST: gi|124833268|gb|EH917707.1|EH917707
EST:     ATTACACTCTAACTGAATCAAACATTGAG                         GAAGCTTTGGAAAACAAGCCGAAGCAAAAGGTGATTTCACTATCAGTTGTT
genomic: ATTACACTCTAACTGAATCAAACATTGAGgtatttcaat ... tcgagtttagGAAGCTTTGGAAAACAAGCCGAAGCAAAAGGTGATTTCACTATCAGTTGTT