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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtgaagcaatttcctttattcttcaaccgaaagaagcaagcatagatgtttgtctttcttatgggaatttctatctgcaaaatgttattagGAAACAGGTTGGATGCCATTACACATTGTTGCAAAGGATGAATGTGAGAGTATTTTGGGTGTTGTTCCACTTTATCTCAAAAGCCATTCTTATGGCGAAT

Basic information

species Arabidopsis thaliana
transcript AT2G23390.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G23390.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv12s0035g01750.t01 (Vitis vinifera), 3'ss of exon 3
--gttagtgaagcaatttcctttattcttcaaccgaaagaagcaagcatagatgtttgtctttcttatgggaatttcta-----tctgcaaaatgttattagGAAACAGGTTGGATGCCATTACACATTGTTGCAAAGGATGAATGTGAGAGTATTTTGGGTGTTGTTCCACTTTATCTCAAAAGCCATTCTTATGGCGAAT
   |   |   |||  || ||  |||  | || | |||| | ||   | | ||   ||      |||      | ||||     | ||||||    | | |||||||||| ||||||||    |||||  |||| |||||||| ||||| | ||| || |||||||||||||||||||| |||||                 
tcatgtttatggca--tttctccatttcttaaacaaaaggaacacataaacatacctgaagagtttaccattctctctaatatgtgtgcaaatctatttcagGAAACAGGATGGATGCCGCGGCACATCATTGCTAAGGATGAGTGTGACAATATATTAGGTGTTGTTCCACTTTATCTTAAAAG-----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47828309|gb|CK117993.1|CK117993
EST:     TAAGTTATGGATTTCTTTCCAGTTTAGAAGATACTGGTTGTGCCGTTCGG                         GAAACAGGTTGGATGCCATTACACATTGTTGCAAAGGATGAATGTGAGAGT
genomic: TAAGTTATGGATTTCTTTCCAGTTTAGAAGATACTGGTTGTGCCGTTCGGgttagtgaag ... atgttattagGAAACAGGTTGGATGCCATTACACATTGTTGCAAAGGATGAATGTGAGAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caagcatagatgtttgtctttcttatgggaatttctatctgcaaaatgttattagGAAACAGGTTGGATGCCATTACACATTGTTGCAAAGGATGAATGTGAGAGTATTTTGGGTGTTGTTCCACTTTATCTCAAAAGCCATTCTTATGGCGAAT
                                          aaaatgttatta  TA-rich tract