1 5' 3' | 2 5' 3' | 3 5' 3' |
GCAATGCTAGTGAAATGCAAGCTGAGTGGATTGAAGAGGACTAGCCCGGTGTTTACATTACTATCAGACAATTATCAGATGTACGTCGAGTCAGATTCAGgtataacaaaacatcttaaactaagcattggctaatcatatacattttgaaagttgataatcataccgtgactaacaggaatctatgattttgtggtttaatcaacag
species | Arabidopsis thaliana |
transcript | AT2G21030.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTTTACATTACTATCAGACAATTATCAGATGTACGTCGAGTCAGATTCAG CCGGGAACAGTTTGGGGAAGTGCATGTTAAGACATGGTGGGAGCAGAACAGEST: gi|116386279|gb|EG428871.1|EG428871
genomic: GTTTACATTACTATCAGACAATTATCAGATGTACGTCGAGTCAGATTCAGgtataacaaa ... taatcaacagCCGGGAACAGTTTGGGGAAGTGCATGTTAAGACATGGTGGGAGCAGAACAG
EST: GTTTACATTACTATCAGACAATTATCAGATGTACGTCGAGTCAGATTCAG CCGGGAACAGTTTGGGGAAGTGCATGTTAAGACATGGTGGGAGCAGAACAGEST: gi|116386287|gb|EG428879.1|EG428879
genomic: GTTTACATTACTATCAGACAATTATCAGATGTACGTCGAGTCAGATTCAGgtataacaaa ... taatcaacagCCGGGAACAGTTTGGGGAAGTGCATGTTAAGACATGGTGGGAGCAGAACAG
EST: GTTTACATTACTATCAGACAATTATCAGATGTACGTCGAGTCAGATTCAG CCGGGAACAGTTTGGGGAAGTGCATGTTAAGACATGGTGGGAGCAGAACAGEST: gi|116386280|gb|EG428872.1|EG428872
genomic: GTTTACATTACTATCAGACAATTATCAGATGTACGTCGAGTCAGATTCAGgtataacaaa ... taatcaacagCCGGGAACAGTTTGGGGAAGTGCATGTTAAGACATGGTGGGAGCAGAACAG
EST: ATTATCAGATGTACGTCGAGTCAGATTCAG CCGGGAACAGTTTGGGGAAGTGCATGTTAAGACATGGTGGGAGCAGAACAG
genomic: ATTATCAGATGTACGTCGAGTCAGATTCAGgtataacaaa ... taatcaacagCCGGGAACAGTTTGGGGAAGTGCATGTTAAGACATGGTGGGAGCAGAACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAATGCTAGTGAAATGCAAGCTGAGTGGATTGAAGAGGACTAGCCCGGTGTTTACATTACTATCAGACAATTATCAGATGTACGTCGAGTCAGATTCAGgtataacaaaacatcttaaactaagcattggctaatcatatacattttgaaagttgataatcataccgtgactaacaggaatctatgattttgtggtttaatcaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG