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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaagacatatatcctagatcctttggtctttcttcagacaagaaccttgtgaatcttgtcctttgatccaaagaaggtaacacaagtttatttttcagTCACAGAGAGATTCAACATACTCAAAGATGGATTCAGCAAGAGAAAGCAAAGACTGGACTCCAAGACACAACTTCAGACCTCCAGGATCTGTCCCGCATC

Basic information

species Arabidopsis thaliana
transcript AT2G21030.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116386287|gb|EG428879.1|EG428879
EST:     TCCGACGATCAG                         TCACAGAGAGATTCAACATACTCAAAGATGGATTCAGCAAGAGAAAGCAAA
genomic: TCCGACGATCAGgtaaaagaca ... tatttttcagTCACAGAGAGATTCAACATACTCAAAGATGGATTCAGCAAGAGAAAGCAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accttgtgaatcttgtcctttgatccaaagaaggtaacacaagtttatttttcagTCACAGAGAGATTCAACATACTCAAAGATGGATTCAGCAAGAGAAAGCAAAGACTGGACTCCAAGACACAACTTCAGACCTCCAGGATCTGTCCCGCATC
                               aggtaac  putative branch site (score: 3)
                                           tttatttttc  putative PPT
                                      acaagtttattttt  TA-rich tract