Sequence
atgc intronic sequence ATGC exonic sequenceACGGCGGTGGGGTGAGAACTATGACAAGATCGTTGAGCTTTACAATGTACAGAGATTTAACCGCCAAGCTCTCCAAACGCCTGCAAGATCCGACGATCAGgtaaaagacatatatcctagatcctttggtctttcttcagacaagaaccttgtgaatcttgtcctttgatccaaagaaggtaacacaagtttatttttcag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G21030.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G21030.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA09G34600.1 (Glycine max), 5'ss of exon 4
ACGGCGGTGGGGTGAGAACTATGACAAGATCGTTGAGCTTTACAATGTACAGAGATTTAACCGCCAAGCTCTCCAAACGCCTGCAAGATCCGACGATCAGgtaaaagac--------------atat-atcctagatcctt--tggtctttcttcagacaagaaccttgtgaatcttgtcctttgatccaaagaaggtaacacaagttta--tttttcag---------------------------
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AAAATGGTGGGGTGAGAATTATGACAGAATCATGGAACTTTACAACGTGCAGAGATTCAATCGACAAGCTCTCAACACTCCTTCAAGATCTGAGGATGAGgtaatctacaactttttacaccaatatgatgttaagttgttaacattcatgtttgttactggcatgagaagatttagcttttttcttcctcaacaaatatattgggtctagatttttcaatgtgcattattcattgcctttgaacag
upper sequence: AT2G21030.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv02s0033g00590.t01 (Vitis vinifera), 5'ss of exon 3
ACGGCGGTGGGGTGAGAACTATGACAAGATCGTTGAGCTTTACAATGTACAGAGATTTAACCGCCAAGCTCTCCAAACGCCTGCAAGATCCGACGATCAGgtaaaagacatatatcctagatcctttggtctttcttcagacaagaaccttgtgaatcttgtcctttgatccaaagaaggtaacacaagtttatttttcag
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GCGATGGTGGGGAGAGAATTATGACCGGATCATGGAGCTGTACAATGTCCAGAGATTCAACCGCCAAGCTCTACACACTCCTCCTAGGTCTGAGGACGAGgtaaacaggttttatttctg-cattttcttccttcactgttcatgctcttagtttaccattttcgggtttgctagatagcaactgtagcttcatgttgtctMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116386287|gb|EG428879.1|EG428879EST: TCCGACGATCAG TCACAGAGAGATTCAACATACTCAAAGATGGATTCAGCAAGAGAAAGCAAA
genomic: TCCGACGATCAGgtaaaagaca ... tatttttcagTCACAGAGAGATTCAACATACTCAAAGATGGATTCAGCAAGAGAAAGCAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACGGCGGTGGGGTGAGAACTATGACAAGATCGTTGAGCTTTACAATGTACAGAGATTTAACCGCCAAGCTCTCCAAACGCCTGCAAGATCCGACGATCAGgtaaaagacatatatcctagatcctttggtctttcttcagacaagaaccttgtgaatcttgtcctttgatccaaagaaggtaacacaagtttatttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA