1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ACAAGAAGAACGAGAACAAGAAAGTCGACGTTGAAGCTTTCCTTCCCGCTCAAGCTGCCATAGACGCTATCAAGGACTCCATgtaagtttgttttatcccaaacaccaaattatttacacgttgttttgttaataatgagcaatgtactgttttgaaacgcag
species | Arabidopsis thaliana |
transcript | AT2G18230.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GAAGCTTTCCTTCCCGCTCAAGCTGCCATAGACGCTATCAAGGACTCCAT GGATCTTTACGCAGCTTACATCAAAGCTGGCCTGCAACGCTAATGAAGAAAEST: gi|163980162|gb|ES149479.1|ES149479
genomic: GAAGCTTTCCTTCCCGCTCAAGCTGCCATAGACGCTATCAAGGACTCCATgtaagtttgt ... tgaaacgcagGGATCTTTACGCAGCTTACATCAAAGCTGGCCTGCAACGCTAATGAAGAAA
EST: AAGCTTTCCTTCCCGCTCAAGCTGCCATAGAACGCTATCAAGGACTCCAT GGATCTTTACGCAGCTTACATCAAAGCEST: gi|116443161|gb|EG485753.1|EG485753
genomic: AAGCTTTCCTTCCCGCTCAAGCTGCCATAGA-CGCTATCAAGGACTCCATgtaagtttgt ... tgaaacgcagGGATCTTTACGCAGCTTACATCAAAGC
EST: GAAGCTTTCCTTCCCGCTCAAGCTGCCATAGACGCTATCAAGGACTCCAT GGATCTTTACGCAGCTTACATCAAAGCTGGCCTGCAACGCTAATGAAGAAAEST: gi|116451434|gb|EG494026.1|EG494026
genomic: GAAGCTTTCCTTCCCGCTCAAGCTGCCATAGACGCTATCAAGGACTCCATgtaagtttgt ... tgaaacgcagGGATCTTTACGCAGCTTACATCAAAGCTGGCCTGCAACGCTAATGAAGAAA
EST: GAAGCTTTCCTTCCCGCTCAAGCTGCCATAGACGCTATCAAGGACTCCAT GGATCTTTACGCAGCTTACATCAAAGCTGGCCTGCAACGCTAATGAAGAAAEST: gi|86075558|gb|DR371315.1|DR371315
genomic: GAAGCTTTCCTTCCCGCTCAAGCTGCCATAGACGCTATCAAGGACTCCATgtaagtttgt ... tgaaacgcagGGATCTTTACGCAGCTTACATCAAAGCTGGCCTGCAACGCTAATGAAGAAA
EST: GAAGCTTTCCTTCCCGCTCAAGCTGCCATAGACGCTATCAAGGACTCCAT GGATCTTTACGCAGCTTACATCAAAGCTGGCCTGCAACGCTAATGAAGAAAEST: gi|116451435|gb|EG494027.1|EG494027
genomic: GAAGCTTTCCTTCCCGCTCAAGCTGCCATAGACGCTATCAAGGACTCCATgtaagtttgt ... tgaaacgcagGGATCTTTACGCAGCTTACATCAAAGCTGGCCTGCAACGCTAATGAAGAAA
EST: GAAGCTTTCCTTCCCGCTCAAGCTGCCATAGACGCTATCAAGGACTCCAT GGATCTTTACGCAGCTTACATCAAAGCTGGCCTGCAACGCTAATGAAGAAAEST: gi|125297047|gb|EL311132.1|EL311132
genomic: GAAGCTTTCCTTCCCGCTCAAGCTGCCATAGACGCTATCAAGGACTCCATgtaagtttgt ... tgaaacgcagGGATCTTTACGCAGCTTACATCAAAGCTGGCCTGCAACGCTAATGAAGAAA
EST: AGACGCTATCAAGGACTCCAT GGATCTTTACGCAGCTTACATCAAAGCTGGCCTGCAACGCTAATGAAGAAA
genomic: AGACGCTATCAAGGACTCCATgtaagtttgt ... tgaaacgcagGGATCTTTACGCAGCTTACATCAAAGCTGGCCTGCAACGCTAATGAAGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAAGAAGAACGAGAACAAGAAAGTCGACGTTGAAGCTTTCCTTCCCGCTCAAGCTGCCATAGACGCTATCAAGGACTCCATgtaagtttgttttatcccaaacaccaaattatttacacgttgttttgttaataatgagcaatgtactgttttgaaacgcag
- - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC