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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCCTGTGCTAACCGGATCATTCCTCCGTGCCCGTGCTATTGGTCTAATGCCCATGATTGATCAGgtaacaaaaactcttaaacccaattctacctctatgtaatgtattaccttagtaagaaaccaggaatcaccttgttctgaaacttgcag

Basic information

species Arabidopsis thaliana
transcript AT2G18230.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G18230.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA01G37790.1 (Glycine max), 5'ss of exon 6
GAGCCTGTGCTAACCGGATCATTCCTCCGTGCCCGTGCTATTGGTCTAATGCCCATGATTGATCAGgtaacaaaaactcttaaacccaattctacctctatgtaatgtattaccttagtaagaaaccaggaatcaccttgttctgaaacttgcag--------------
|| || |||||  | || || ||||| ||||| ||||||||||| |||||||| |||||||| |||||||  ||    | |   ||    | |   | | |    || |||     | | |  ||    | |||   || |    |||| |  |               
GAACCCGTGCTTCCTGGTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGgtaa--aagttgcctcctccttgctttctgtttttcatttgcattggaacaatgaagaagtgaggatc-ttttctgaaaaaacataaaaggcattaagcattt

upper sequence: AT2G18230.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA11G07530.1 (Glycine max), 5'ss of exon 6
GAGCCTGTGCTAACCGGATCATTCCTCCGTGCCCGTGCTATTGGTCTAATGCCCATGATTGATCAGgtaacaaaaactcttaaacccaattctacctctatgtaatgtattaccttagtaagaaaccaggaatcaccttgttctgaaacttgcag--------------
|| || |||||  | || || ||||| ||||| ||||||||||| |||||||| |||||||| |||||||  ||    | |   ||    | |   | | |    || |||     | | |  ||    |  ||   || |    ||| ||  |               
GAACCCGTGCTTCCTGGTTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCTATGATTGACCAGgtaa--aagttccctcctccttgctttctgtttttcatttgcattgggacaatgaagaagtgagggtc-tattctgaaaaaatttaaaaggctacccattaaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116390031|gb|EG432623.1|EG432623
EST:     GATCATTCCTCCGTGCCCGTGCTATTGGTCTAATGCCCATGATTGATCAG                         A
genomic: GATCATTCCTCCGTGCCCGTGCTATTGGTCTAATGCCCATGATTGATCAGgtaacaaaaa ... aaacttgcag-
EST: gi|116390031|gb|EG432623.1|EG432623
EST:     GATCATTCCTCCGTGCCCGTGCTATTGGTCTAATGCCCATGATTGATCAG                         A
genomic: GATCATTCCTCCGTGCCCGTGCTATTGGTCTAATGCCCATGATTGATCAGgtaacaaaaa ... aaacttgcag-
EST: gi|116443156|gb|EG485748.1|EG485748
EST:     GATCATTCCTCCGTGCCCGTGCTATTGGTCTAATGCCCATGATTGATCAG                         GGTGAGAAAGACGACAAGATCATTGCAGTATGTGCTGATGATCCCGAGTTC
genomic: GATCATTCCTCCGTGCCCGTGCTATTGGTCTAATGCCCATGATTGATCAGgtaacaaaaa ... aaacttgcagGGTGAGAAAGACGACAAGATCATTGCAGTATGTGCTGATGATCCCGAGTTC
EST: gi|124948954|gb|EL024643.1|EL024643
EST:     GCCCGTGCTATTGGTCTAATGCCCATGATTGATCAG                         GGTGAGAAAGACGACAAGATCATTGCAGTATGTGCTGATGATCCCGAGTTC
genomic: GCCCGTGCTATTGGTCTAATGCCCATGATTGATCAGgtaacaaaaa ... aaacttgcagGGTGAGAAAGACGACAAGATCATTGCAGTATGTGCTGATGATCCCGAGTTC
EST: gi|116390040|gb|EG432632.1|EG432632
EST:     GATCATTCCTCCGTGCCCGTGCTATTGGTCTAATGCCCATGATTGATCAG                         A
genomic: GATCATTCCTCCGTGCCCGTGCTATTGGTCTAATGCCCATGATTGATCAGgtaacaaaaa ... aaacttgcag-
EST: gi|116390040|gb|EG432632.1|EG432632
EST:     GATCATTCCTCCGTGCCCGTGCTATTGGTCTAATGCCCATGATTGATCAG                         A
genomic: GATCATTCCTCCGTGCCCGTGCTATTGGTCTAATGCCCATGATTGATCAGgtaacaaaaa ... aaacttgcag-
EST: gi|116443161|gb|EG485753.1|EG485753
EST:     GATCATTCCTCCGTGCCCGTGCTATTGGTCTAATGCCCATGATTGATCAG                         GGTGAGAAAGACGACAAGATCATTGCAGTATGTGCTGATGATCCCGAGTTC
genomic: GATCATTCCTCCGTGCCCGTGCTATTGGTCTAATGCCCATGATTGATCAGgtaacaaaaa ... aaacttgcagGGTGAGAAAGACGACAAGATCATTGCAGTATGTGCTGATGATCCCGAGTTC
EST: gi|116451434|gb|EG494026.1|EG494026
EST:     GATCATTCCTCCGTGCCCGTGCTATTGGTCTAATGCCCATGATTGATCAG                         GGTGAGAAAGACGACAAGATCATTGCAGTATGTGCTGATGATCCCGAGTTC
genomic: GATCATTCCTCCGTGCCCGTGCTATTGGTCTAATGCCCATGATTGATCAGgtaacaaaaa ... aaacttgcagGGTGAGAAAGACGACAAGATCATTGCAGTATGTGCTGATGATCCCGAGTTC
EST: gi|164224212|gb|EL972207.1|EL972207
EST:     GATCATTCCTCCGTGCCCGTGCTATTGGTCTAATGCCCATGATTGATCAG                         GGTGAGAAAGACGACAAGATCATTGCAGTATGTGCTG
genomic: GATCATTCCTCCGTGCCCGTGCTATTGGTCTAATGCCCATGATTGATCAGgtaacaaaaa ... aaacttgcagGGTGAGAAAGACGACAAGATCATTGCAGTATGTGCTG
EST: gi|86075558|gb|DR371315.1|DR371315
EST:     GATCATTCCTCCGTGCCCGTGCTATTGGTCTAATGCCCATGATTGATCAG                         GGTGAGAAAGACGACAAGATCATTGCAGTATGTGCTGATGATCCCGAGTTC
genomic: GATCATTCCTCCGTGCCCGTGCTATTGGTCTAATGCCCATGATTGATCAGgtaacaaaaa ... aaacttgcagGGTGAGAAAGACGACAAGATCATTGCAGTATGTGCTGATGATCCCGAGTTC
EST: gi|116451435|gb|EG494027.1|EG494027
EST:     GATCATTCCTCCGTGCCCGTGCTATTGGTCTAATGCCCATGATTGATCAG                         GGTGAGAAAGACGACAAGATCATTGCAGTATGTGCTGATGATCCCGAGTTC
genomic: GATCATTCCTCCGTGCCCGTGCTATTGGTCTAATGCCCATGATTGATCAGgtaacaaaaa ... aaacttgcagGGTGAGAAAGACGACAAGATCATTGCAGTATGTGCTGATGATCCCGAGTTC
EST: gi|125123645|gb|EL170064.1|EL170064
EST:     GATCATTCCTCCGTGCCCGTGCTATTGGTCTAATGCCCATGATTGATCAG                         GGTGAGAAAGACGACAAGATCATTGCAGTA
genomic: GATCATTCCTCCGTGCCCGTGCTATTGGTCTAATGCCCATGATTGATCAGgtaacaaaaa ... aaacttgcagGGTGAGAAAGACGACAAGATCATTGCAGTA