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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAAGATTTTTCGGTGTTCTCATAGAACACTACGCAGGGGATTTCCCGTTATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAGgtttaacttgtgctgtctctcgagtcttctgtttaaattctttttgaaatccatgtaactgacttaatgaggggatatgcag

Basic information

species Arabidopsis thaliana
transcript AT2G04842.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116385886|gb|EG428478.1|EG428478
EST:     TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAG                         TTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
genomic: TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAGgtttaacttg ... ggatatgcagTTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
EST: gi|116385828|gb|EG428420.1|EG428420
EST:     TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAG                         TTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
genomic: TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAGgtttaacttg ... ggatatgcagTTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
EST: gi|116385829|gb|EG428421.1|EG428421
EST:     TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAG                         TTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
genomic: TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAGgtttaacttg ... ggatatgcagTTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
EST: gi|116385892|gb|EG428484.1|EG428484
EST:     TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAG                         TTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
genomic: TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAGgtttaacttg ... ggatatgcagTTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
EST: gi|116385825|gb|EG428417.1|EG428417
EST:     TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAG                         TTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
genomic: TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAGgtttaacttg ... ggatatgcagTTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
EST: gi|116385904|gb|EG428496.1|EG428496
EST:     TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAG                         TTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
genomic: TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAGgtttaacttg ... ggatatgcagTTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
EST: gi|116385885|gb|EG428477.1|EG428477
EST:     TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACCATCAG                         TTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
genomic: TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAGgtttaacttg ... ggatatgcagTTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
EST: gi|116385833|gb|EG428425.1|EG428425
EST:     TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAG                         TTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
genomic: TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAGgtttaacttg ... ggatatgcagTTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
EST: gi|116385903|gb|EG428495.1|EG428495
EST:     TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAG                         TTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
genomic: TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAGgtttaacttg ... ggatatgcagTTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
EST: gi|116385899|gb|EG428491.1|EG428491
EST:     TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAG                         TTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
genomic: TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAGgtttaacttg ... ggatatgcagTTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
EST: gi|116386169|gb|EG428761.1|EG428761
EST:     TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAG                         TTGGAGTTTTGTAAGGAAGTGAGTAAGAAGCTGAGAGCTTGTGGAGTGAGG
genomic: TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAGgtttaacttg ... ggatatgcagTTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
EST: gi|116386172|gb|EG428764.1|EG428764
EST:     TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAG                         TTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
genomic: TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAGgtttaacttg ... ggatatgcagTTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
EST: gi|116385887|gb|EG428479.1|EG428479
EST:     TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAG                         TTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
genomic: TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAGgtttaacttg ... ggatatgcagTTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
EST: gi|116386176|gb|EG428768.1|EG428768
EST:     TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAG                         TTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
genomic: TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAGgtttaacttg ... ggatatgcagTTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
EST: gi|116385830|gb|EG428422.1|EG428422
EST:     TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAG                         TTGGAGTTTTGTTAGGAAGTGAGTAAGAAACTGAAAGCTTGTGGAGTGAGG
genomic: TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAGgtttaacttg ... ggatatgcagTTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
EST: gi|116386168|gb|EG428760.1|EG428760
EST:     TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAG                         TTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGGGTGAGG
genomic: TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAGgtttaacttg ... ggatatgcagTTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
EST: gi|116386173|gb|EG428765.1|EG428765
EST:     TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAG                         TTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
genomic: TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAGgtttaacttg ... ggatatgcagTTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
EST: gi|116385834|gb|EG428426.1|EG428426
EST:     TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAG                         TTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
genomic: TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAGgtttaacttg ... ggatatgcagTTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
EST: gi|116385888|gb|EG428480.1|EG428480
EST:     TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAG                         TTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
genomic: TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAGgtttaacttg ... ggatatgcagTTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
EST: gi|116385835|gb|EG428427.1|EG428427
EST:     TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAG                         TTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
genomic: TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAGgtttaacttg ... ggatatgcagTTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
EST: gi|116385831|gb|EG428423.1|EG428423
EST:     TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAG                         TTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
genomic: TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAGgtttaacttg ... ggatatgcagTTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
EST: gi|116385891|gb|EG428483.1|EG428483
EST:     TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAG                         TTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAAAGCTTGTGGAAGTGAG
genomic: TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAGgtttaacttg ... ggatatgcagTTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGA-GTGAG
EST: gi|116385895|gb|EG428487.1|EG428487
EST:     TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAG                         TTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
genomic: TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAGgtttaacttg ... ggatatgcagTTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
EST: gi|116386170|gb|EG428762.1|EG428762
EST:     TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAG                         TTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
genomic: TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAGgtttaacttg ... ggatatgcagTTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
EST: gi|116385898|gb|EG428490.1|EG428490
EST:     TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAG                         TTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
genomic: TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAGgtttaacttg ... ggatatgcagTTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
EST: gi|116385832|gb|EG428424.1|EG428424
EST:     TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAG                         TTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
genomic: TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAGgtttaacttg ... ggatatgcagTTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
EST: gi|116385896|gb|EG428488.1|EG428488
EST:     TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAG                         TTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
genomic: TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAGgtttaacttg ... ggatatgcagTTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
EST: gi|116385902|gb|EG428494.1|EG428494
EST:     TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAG                         TTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG
genomic: TATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTGTCACAGACAATCAGgtttaacttg ... ggatatgcagTTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAGTGAGG