1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCCAGCTATCTCCAGCAGCGGTCCTAAGAAAGCAGAGCCATCGACGGTCGTGCTTCCTAGTAATGAATCATCTGATAAGCTTCTCAAAATTCGACACACGgtacacttcttttggctctgtttttgttttgtgattttaagagaattatgaaaaatttattcaagttgttaactttaatgctgttagtgaagttgggttc...
species | Arabidopsis thaliana |
transcript | AT2G04842.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGCTTCCTAGTAATGAATCATCTGATAAGCTTCTCAAAATTCGACACACG TGTGCGCATGTAEST: gi|124773168|gb|EH863297.1|EH863297
genomic: TGCTTCCTAGTAATGAATCATCTGATAAGCTTCTCAAAATTCGACACACGgtacacttct ... gtggattcagTGTGCGCATGTA
EST: GCTTCCTAGTAATGAATCATCTGATAAGCTTCTCAAAAATTCGACACACG TGTGCGCATGTA
genomic: GCTTCCTAGTAATGAATCATCTGATAAGCTTCTCAAAA-TTCGACACACGgtacacttct ... gtggattcagTGTGCGCATGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCAGCTATCTCCAGCAGCGGTCCTAAGAAAGCAGAGCCATCGACGGTCGTGCTTCCTAGTAATGAATCATCTGATAAGCTTCTCAAAATTCGACACACGgtacacttcttttggctctgtttttgttttgtgattttaagagaattatgaaaaatttattcaagttgttaactttaatgctgttagtgaagttgggttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagagaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgaaaaa