1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTATGAGGTTGACGAAGGAGGTGGCGCCTTTTACGGCCCAAAGATCGACCTTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAGgtaagaaagcttcatatactcttacaaatacctgatgctacttctctattaacgggttctggttggcacgcag
species | Arabidopsis thaliana |
transcript | AT2G04842.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAG GTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAACEST: gi|116385828|gb|EG428420.1|EG428420
genomic: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAGgtaagaaagc ... tggcacgcagGTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAAC
EST: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAG GTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAACEST: gi|124780578|gb|EH870521.1|EH870521
genomic: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAGgtaagaaagc ... tggcacgcagGTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAAC
EST: ATTGGGTAGAAAATGGCAGTGCTCAACTATTCAG GTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAACEST: gi|116385892|gb|EG428484.1|EG428484
genomic: ATTGGGTAGAAAATGGCAGTGCTCAACTATTCAGgtaagaaagc ... tggcacgcagGTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAAC
EST: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAG GTCGAC-TCAATCTTCTTCAGAGATTTGACATTACCTATGTAGACACAAACEST: gi|116385904|gb|EG428496.1|EG428496
genomic: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAGgtaagaaagc ... tggcacgcagGTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAAC
EST: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAGCTATTCAG GTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAACEST: gi|116385897|gb|EG428489.1|EG428489
genomic: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAGgtaagaaagc ... tggcacgcagGTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAAC
EST: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAG GTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAA-CEST: gi|116385885|gb|EG428477.1|EG428477
genomic: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAGgtaagaaagc ... tggcacgcagGTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAAC
EST: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAG GTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAACEST: gi|116385903|gb|EG428495.1|EG428495
genomic: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAGgtaagaaagc ... tggcacgcagGTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAAC
EST: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAGCTATTCAG GTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAACEST: gi|116385899|gb|EG428491.1|EG428491
genomic: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAGgtaagaaagc ... tggcacgcagGTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAAC
EST: CTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAG GTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAACEST: gi|116386174|gb|EG428766.1|EG428766
genomic: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAGgtaagaaagc ... tggcacgcagGTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAAC
EST: CTCAACTATTCAG GTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAACEST: gi|116386169|gb|EG428761.1|EG428761
genomic: CTCAACTATTCAGgtaagaaagc ... tggcacgcagGTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAAC
EST: AGAAAATGGCAGTGCTCAACTATTCAG GTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAACEST: gi|116386172|gb|EG428764.1|EG428764
genomic: AGAAAATGGCAGTGCTCAACTATTCAGgtaagaaagc ... tggcacgcagGTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAAC
EST: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAG GTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAACEST: gi|116385887|gb|EG428479.1|EG428479
genomic: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAGgtaagaaagc ... tggcacgcagGTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAAC
EST: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAG GTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAACEST: gi|116386176|gb|EG428768.1|EG428768
genomic: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAGgtaagaaagc ... tggcacgcagGTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAAC
EST: CTCAACTATTCAG GTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAACEST: gi|116385830|gb|EG428422.1|EG428422
genomic: CTCAACTATTCAGgtaagaaagc ... tggcacgcagGTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAAC
EST: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAG GTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAACEST: gi|116386168|gb|EG428760.1|EG428760
genomic: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAGgtaagaaagc ... tggcacgcagGTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAAC
EST: TTAAGATTGAAGAGGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAG GTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAACEST: gi|116385834|gb|EG428426.1|EG428426
genomic: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAGgtaagaaagc ... tggcacgcagGTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAAC
EST: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAG GTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAACEST: gi|116385888|gb|EG428480.1|EG428480
genomic: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAGgtaagaaagc ... tggcacgcagGTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAAC
EST: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAG GTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAACEST: gi|116385835|gb|EG428427.1|EG428427
genomic: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAGgtaagaaagc ... tggcacgcagGTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAAC
EST: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAG GTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAACEST: gi|116385831|gb|EG428423.1|EG428423
genomic: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAGgtaagaaagc ... tggcacgcagGTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAAC
EST: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAG GTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAACEST: gi|116385891|gb|EG428483.1|EG428483
genomic: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAGgtaagaaagc ... tggcacgcagGTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAAC
EST: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAG GTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAACEST: gi|116385895|gb|EG428487.1|EG428487
genomic: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAGgtaagaaagc ... tggcacgcagGTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAAC
EST: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAG GTCGACTTCGATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAACEST: gi|116386170|gb|EG428762.1|EG428762
genomic: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAGgtaagaaagc ... tggcacgcagGTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAAC
EST: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAG GTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAACEST: gi|116385898|gb|EG428490.1|EG428490
genomic: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAGgtaagaaagc ... tggcacgcagGTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAAC
EST: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAG GTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAACEST: gi|116385832|gb|EG428424.1|EG428424
genomic: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAGgtaagaaagc ... tggcacgcagGTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAAC
EST: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAG GTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAACEST: gi|116385896|gb|EG428488.1|EG428488
genomic: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAGgtaagaaagc ... tggcacgcagGTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAAC
EST: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAG GTCGACTTC-ATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAACEST: gi|116385902|gb|EG428494.1|EG428494
genomic: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAGgtaagaaagc ... tggcacgcagGTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAAC
EST: CTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAG GTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAAC
genomic: TTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAGgtaagaaagc ... tggcacgcagGTCGACTTCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATGAGGTTGACGAAGGAGGTGGCGCCTTTTACGGCCCAAAGATCGACCTTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAGgtaagaaagcttcatatactcttacaaatacctgatgctacttctctattaacgggttctggttggcacgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG