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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGTTGTTGTAGCGTACTTGATGAAACGAAAAGGGTGGAGACTCGCTGAGAGTCATCAGTGGGTTAAACAACGGAGACCAAGCACTGACATAAGTCCAGgcaagtacttagactttggattagaaacttacttattgttcttgaaactgttactcattgctttttctttgtacacagag

Basic information

species Arabidopsis thaliana
transcript AT2G04550.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G04550.3 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA02G43410.1 (Glycine max), 5'ss of exon 4
GCGGTTGTTGTAGCGTACTTGATGAAACGAAAAGGGTGGAGACTCGCTGAGAGTCATCAGTGGGTTAAACAACGGAGACCAAGCACTGACATAAGTCCAGgcaagtacttagactttggattagaaacttacttattgttcttgaaactgttactc-attgctttttctttgtacacagag----------------------
||  ||||  | || |||||||||||    |||||||||||||| ||  ||||| |||||||||| ||| ||||||||||      |||  ||| || ||| | ||   |  ||| |   ||  |   || |||   ||     | |  |  |    ||||   | |   |      |                         
GCTATTGTGATTGCATACTTGATGAAGTTCAAAGGGTGGAGACTTGCACAGAGTTATCAGTGGGTAAAAGAACGGAGACCTTCTGTTGAATTAACTCAAGgtatgtttgtttactgt---tttcatttttgctttcagtctccaataaagccatcagattgaagtgtgggtaagtttatgacttttatctggccaagttattt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125017050|gb|EL089319.1|EL089319
EST:     GAGTCATCAGTGGGTTAAACAACGGAGACCAAGCACTGACATAAGTCCAG                         A
genomic: GAGTCATCAGTGGGTTAAACAACGGAGACCAAGCACTGACATAAGTCCAGgcaagtactt ... gtacacagag-
EST: gi|125017050|gb|EL089319.1|EL089319
EST:     GAGTCATCAGTGGGTTAAACAACGGAGACCAAGCACTGACATAAGTCCAG                         A
genomic: GAGTCATCAGTGGGTTAAACAACGGAGACCAAGCACTGACATAAGTCCAGgcaagtactt ... gtacacagag-
EST: gi|125017050|gb|EL089319.1|EL089319
EST:     GAGTCATCAGTGGGTTAAACAACGGAGACCAAGCACTGACATAAGTCCAG                         A
genomic: GAGTCATCAGTGGGTTAAACAACGGAGACCAAGCACTGACATAAGTCCAGgcaagtactt ... gtacacagag-