Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGGTTCCTATGTGCCAGAATCTCTACAGGAATTCATTCACTTATCATGGTCTTGATAATGAAAAAGTTTTACAGTTTGATGATGCTATTAAGTTCTTAGgtatgttgattctatctcaagtttctagatttcatctttatgattttttcttgacggtcttgctttgtgtag

Basic information

species Arabidopsis thaliana
transcript AT2G04550.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G04550.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: EFJ30059 (Selaginella moellendorffii), 5'ss of exon 2
ACGGTTCCTATGTGCCAGAATCTCTACAGGAATTCATTCACTTATCATGGTCTTGATAATGAAAAAGTTTTACAGTTTGATGATGCTATTAAGTTCTTAGgtatgttgattctatctcaagtttctagatttcatctttatgattttttcttgacggtcttgctttgtgtag
|| ||  | |  |||||||||||||||| |||||| |||||||||||  |  |  |  | || | |   |||| | | || ||     |  | ||| | ||||  ||  ||||        ||||    |||| | |   || || | ||  |   |      | |||||||
ACTGTAGCGAGATGCCAGAATCTCTACAAGAATTCTTTCACTTATCACTGCATACAAGAGGAGAGA---TTACCGCTGGAAGAGTGCCTGGATTTCATCGgtaactt--ttct--------tttc----tttcgtttgcgtggttctatc--ggaagatggattgtgtgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124803536|gb|EH891849.1|EH891849
EST:     TCTTGATAATGAAAAAGTTTTACAGTTTGATGATGCTATTAAGTTCTTAG                         ACCAATGTGAGAAGGACAAGGCACGTGTTCTTGTGCATTG
genomic: TCTTGATAATGAAAAAGTTTTACAGTTTGATGATGCTATTAAGTTCTTAGgtatgttgat ... ctttgtgtagACCAATGTGAGAAGGACAAGGCACGTGTTCTTGTGCATTG
EST: gi|164115330|gb|ES068537.1|ES068537
EST:     TTACAGTTTGATGATGCTATTAAGTTCTTAG                         ACCAATGTGAGAAGGACAAGGCACGTGTTCTTGTGCATTGCATGTCTGGGA
genomic: TTACAGTTTGATGATGCTATTAAGTTCTTAGgtatgttgat ... ctttgtgtagACCAATGTGAGAAGGACAAGGCACGTGTTCTTGTGCATTGCATGTCTGGGA
EST: gi|124711706|gb|EH803108.1|EH803108
EST:     TTTGATGATGCTATTAAGTTCTTAG                         ACCAATGTGAGAAGGACAAGGCACGTGTTCTTGTGCATTGCATGTCTGGGA
genomic: TTTGATGATGCTATTAAGTTCTTAGgtatgttgat ... ctttgtgtagACCAATGTGAGAAGGACAAGGCACGTGTTCTTGTGCATTGCATGTCTGGGA
EST: gi|164066239|gb|ES155669.1|ES155669
EST:     ATGAAAAAGTTTTACAGTTTGATGATGCTATTTAAGTTCTTAG                         ACCAATGTGAGAAGGACAAGGCAC
genomic: ATGAAAAAGTTTTACAGTTTGATGATGCTA-TTAAGTTCTTAGgtatgttgat ... ctttgtgtagACCAATGTGAGAAGGACAAGGCAC
EST: gi|19876233|gb|AU237064.1|AU237064
EST:     TCTTGATAATGAAAAAGTTTTACAGTTTGATGATGCTATTAAGTTCTTAG                         ACCAATGTGAGAAGGACAAGGCACGTGTTCTTGTGCATTGCATGTCTGGGA
genomic: TCTTGATAATGAAAAAGTTTTACAGTTTGATGATGCTATTAAGTTCTTAGgtatgttgat ... ctttgtgtagACCAATGTGAGAAGGACAAGGCACGTGTTCTTGTGCATTGCATGTCTGGGA