Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtacttagactttggattagaaacttacttattgttcttgaaactgttactcattgctttttctttgtacacagagTTTTACCAACAACTGCAGGAGTTTGAGCAGGGGATATTCGGATCTGAGATGATGTCGGCGATGAATATTAATGATGCTCCAACGTTTGGGTTTGGTTTCC

Basic information

species Arabidopsis thaliana
transcript AT2G04550.3
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125017050|gb|EL089319.1|EL089319
EST:     GAGTCATCAGTGGGTTAAACAACGGAGACCAAGCACTGACATAAGTCCAG                         A
genomic: GAGTCATCAGTGGGTTAAACAACGGAGACCAAGCACTGACATAAGTCCAGgcaagtactt ... gtacacagag-
EST: gi|125017050|gb|EL089319.1|EL089319
EST:     GAGTCATCAGTGGGTTAAACAACGGAGACCAAGCACTGACATAAGTCCAG                         A
genomic: GAGTCATCAGTGGGTTAAACAACGGAGACCAAGCACTGACATAAGTCCAGgcaagtactt ... gtacacagag-
EST: gi|125017050|gb|EL089319.1|EL089319
EST:     GAGTCATCAGTGGGTTAAACAACGGAGACCAAGCACTGACATAAGTCCAG                         A
genomic: GAGTCATCAGTGGGTTAAACAACGGAGACCAAGCACTGACATAAGTCCAGgcaagtactt ... gtacacagag-


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacttacttattgttcttgaaactgttactcattgctttttctttgtacacagagTTTTACCAACAACTGCAGGAGTTTGAGCAGGGGATATTCGGATCTGAGATGATGTCGGCGATGAATATTAATGATGCTCCAACGTTTGGGTTTGGTTTCC
 aacttac  putative branch site (score: 2)
                                ttgctttttctttgt  putative PPT
                                    tttttcttt  TA-rich tract