1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ACCCTCCAAACAATGTTTTCACTTGGAAGATACTTCATTTCTCTAACTTGGAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTGgttagtttttttttggtaaccatatcatttagaccttattccggaaaaaatcataaagattgcacccattatgtgaatttttttgccgtggtcaagtataataacggtttttggttgatgtataatcag
species | Arabidopsis thaliana |
transcript | AT2G04170.5 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTG GAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGATEST: gi|116383985|gb|EG426577.1|EG426577
genomic: GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTGgttagttttt ... gtataatcagGAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
EST: AAGATAAATTCTATTACTCTGATGATTTTCTTGGTTGAAGACCGATATTG GAGATTAGGATTTAACCCAAAAGGTACEST: gi|116387896|gb|EG430488.1|EG430488
genomic: AAGATAAATTCTATTACTCTGATGATTTTCTTG-TTGAAGACCGATATTGgttagttttt ... gtataatcagGAGATTAGGATTTAACCCAAAAGGTAC
EST: GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTG GAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGATEST: gi|116383981|gb|EG426573.1|EG426573
genomic: GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTGgttagttttt ... gtataatcagGAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
EST: GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTG GAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGATEST: gi|116389941|gb|EG432533.1|EG432533
genomic: GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTGgttagttttt ... gtataatcagGAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
EST: GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTG GAGATTAGGATTTAACCCEST: gi|116389923|gb|EG432515.1|EG432515
genomic: GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTGgttagttttt ... gtataatcagGAGATTAGGATTTAACCC
EST: TCTGATGATTTTCTTGTTGAAGACCGATATTG GAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGATEST: gi|116389932|gb|EG432524.1|EG432524
genomic: TCTGATGATTTTCTTGTTGAAGACCGATATTGgttagttttt ... gtataatcagGAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
EST: GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTG GAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
genomic: GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTGgttagttttt ... gtataatcagGAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCCTCCAAACAATGTTTTCACTTGGAAGATACTTCATTTCTCTAACTTGGAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTGgttagtttttttttggtaaccatatcatttagaccttattccggaaaaaatcataaagattgcacccattatgtgaatttttttgccgtggtcaagtataataacggtttttggttgatgtataatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA