1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATCGAAGAGACAGAATCTCTTCCAAAAGGCTGGGAAGTCAATGTTGAACTCAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgtagatttcaaagatttgtcttaacattttctatgaaccgatgagttgattgtgacttgcatgtttttgcaaaattgtggattgtag
species | Arabidopsis thaliana |
transcript | AT2G04170.5 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAAEST: gi|116387787|gb|EG430379.1|EG430379
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAAEST: gi|116389939|gb|EG432531.1|EG432531
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: CAAACTCTTTGTCTACAATGGGAAGCAACTCAAGTATTTGATTGTTAAAG ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAAEST: gi|116387839|gb|EG430431.1|EG430431
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAAEST: gi|116389960|gb|EG432552.1|EG432552
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAAEST: gi|116387835|gb|EG430427.1|EG430427
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAAEST: gi|116389964|gb|EG432556.1|EG432556
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAAEST: gi|116389961|gb|EG432553.1|EG432553
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAAEST: gi|116387832|gb|EG430424.1|EG430424
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGAGATACGGAAEST: gi|116389962|gb|EG432554.1|EG432554
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAAEST: gi|116387833|gb|EG430425.1|EG430425
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAAEST: gi|116389958|gb|EG432550.1|EG432550
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAAEST: gi|116389927|gb|EG432519.1|EG432519
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAAEST: gi|116389922|gb|EG432514.1|EG432514
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAEST: gi|116383985|gb|EG426577.1|EG426577
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGA
EST: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAAEST: gi|116389966|gb|EG432558.1|EG432558
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAAEST: gi|116389924|gb|EG432516.1|EG432516
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAAEST: gi|116383978|gb|EG426570.1|EG426570
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAAEST: gi|116387896|gb|EG430488.1|EG430488
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAAEST: gi|116383981|gb|EG426573.1|EG426573
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAAEST: gi|116389941|gb|EG432533.1|EG432533
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: CAAACTCTTTGTCTACCATGGGAAGCAACGCACGTATTTGATTGTTAAAG ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAAEST: gi|116389957|gb|EG432549.1|EG432549
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAAEST: gi|116387841|gb|EG430433.1|EG430433
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAAEST: gi|116389932|gb|EG432524.1|EG432524
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGGTAAAG ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAAEST: gi|116387830|gb|EG430422.1|EG430422
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG ATGGAATAGTGAAACGATACAATGATGCGAAAAA-GAGTGGGGATACGGAAEST: gi|116389967|gb|EG432559.1|EG432559
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
EST: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAG ATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
genomic: CAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgt ... tggattgtagATGGAATAGTGAAACGATACAATGATGCGAAAAAAGAGTGGGGATACGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCGAAGAGACAGAATCTCTTCCAAAAGGCTGGGAAGTCAATGTTGAACTCAAACTCTTTGTCTACAATGGGAAGCAACGCAAGTATTTGATTGTTAAAGgtgtgactgtagatttcaaagatttgtcttaacattttctatgaaccgatgagttgattgtgacttgcatgtttttgcaaaattgtggattgtag
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