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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtttttttttggtaaccatatcatttagaccttattccggaaaaaatcataaagattgcacccattatgtgaatttttttgccgtggtcaagtataataacggtttttggttgatgtataatcagGAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGATCCCAATCTTCCTATATGCTCAAGGCCATAAGCCAAACGCAGTTGCTACA

Basic information

species Arabidopsis thaliana
transcript AT2G04170.5
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116389927|gb|EG432519.1|EG432519
EST:     GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTG                         GAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
genomic: GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTGgttagttttt ... gtataatcagGAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
EST: gi|116383985|gb|EG426577.1|EG426577
EST:     AAGATAAATTCTATTACTCTGATGATTTTCTTGGTTGAAGACCGATATTG                         GAGATTAGGATTTAACCCAAAAGGTAC
genomic: AAGATAAATTCTATTACTCTGATGATTTTCTTG-TTGAAGACCGATATTGgttagttttt ... gtataatcagGAGATTAGGATTTAACCCAAAAGGTAC
EST: gi|116387896|gb|EG430488.1|EG430488
EST:     GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTG                         GAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
genomic: GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTGgttagttttt ... gtataatcagGAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
EST: gi|116383981|gb|EG426573.1|EG426573
EST:     GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTG                         GAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
genomic: GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTGgttagttttt ... gtataatcagGAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
EST: gi|116389941|gb|EG432533.1|EG432533
EST:     GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTG                         GAGATTAGGATTTAACCC
genomic: GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTGgttagttttt ... gtataatcagGAGATTAGGATTTAACCC
EST: gi|116389923|gb|EG432515.1|EG432515
EST:     TCTGATGATTTTCTTGTTGAAGACCGATATTG                         GAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
genomic: TCTGATGATTTTCTTGTTGAAGACCGATATTGgttagttttt ... gtataatcagGAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
EST: gi|116389932|gb|EG432524.1|EG432524
EST:     GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTG                         GAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT
genomic: GAAGATAAATTCTATTACTCTGATGATTTTCTTGTTGAAGACCGATATTGgttagttttt ... gtataatcagGAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaatttttttgccgtggtcaagtataataacggtttttggttgatgtataatcagGAGATTAGGATTTAACCCAAAAGGTACTGGTGATGGAAGATCACAAGCGATCCCAATCTTCCTATATGCTCAAGGCCATAAGCCAAACGCAGTTGCTACA
                   aagtataataa  TA-rich tract