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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTCGTCCTGGCGGAGGAGGAGGTCCTGGTTCTGGTTGTGGCTCAGGGACAGGCGGCGGAAATCAGGGGCAAGGAGgtggttaaacactaaaaccagtttcttgattttcttggaattttttttttttgattctctttttttactggagtgacag

Basic information

species Arabidopsis thaliana
transcript AT2G04170.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116389939|gb|EG432531.1|EG432531
EST:     TGGTTCTGGTTGTGGCTCAGGGACAGGCGGCGGAAATCAGGGGCAAGGAG                         GAATGTGGAGAGATGAGCGACCATCAAACAAGATACTGACAATAACAAGTT
genomic: TGGTTCTGGTTGTGGCTCAGGGACAGGCGGCGGAAATCAGGGGCAAGGAGgtggttaaac ... ggagtgacagGAATGTGGAGAGATGAGCGACCATCAAACAAGATACTGACAATAACAAGTT
EST: gi|116389962|gb|EG432554.1|EG432554
EST:     TGGTTCTGGTTGTGGCTCAGGGACAGGCGGCGGAAATCAGGGGCAAGGAG                         GAATGTGGAGAGATGAGCGACCATCAAACAAGATACTGACAATAACAAGTT
genomic: TGGTTCTGGTTGTGGCTCAGGGACAGGCGGCGGAAATCAGGGGCAAGGAGgtggttaaac ... ggagtgacagGAATGTGGAGAGATGAGCGACCATCAAACAAGATACTGACAATAACAAGTT
EST: gi|116389958|gb|EG432550.1|EG432550
EST:     GGACAGGCGGCGGAAATCAGGGGCAAGGAG                         GAATGTGGAGAGATGAGCGACCATCAAACAAGATACTGACAATAACAAGTT
genomic: GGACAGGCGGCGGAAATCAGGGGCAAGGAGgtggttaaac ... ggagtgacagGAATGTGGAGAGATGAGCGACCATCAAACAAGATACTGACAATAACAAGTT
EST: gi|116389966|gb|EG432558.1|EG432558
EST:     GGTTGTGGCTCAGGGACAGGCGGCGGAAATCAGTGGCAAGGAG                         GAATGTGGAGAGATGAGCGACCATCAAACAAGATACTGACAATAACAAGTT
genomic: GGTTGTGGCTCAGGGACAGGCGGCGGAAATCAGGGGCAAGGAGgtggttaaac ... ggagtgacagGAATGTGGAGAGATGAGCGACCATCAAACAAGATACTGACAATAACAAGTT
EST: gi|116387830|gb|EG430422.1|EG430422
EST:     TGGTTCTGGTTGTGGCTCAGGGACAGGCGGCGGAAATCAGGGGCAAGGAG                         GAATGTGGAGAGATGAGCGACCATCAAACAAGATACTGACAATAACAAGAT
genomic: TGGTTCTGGTTGTGGCTCAGGGACAGGCGGCGGAAATCAGGGGCAAGGAGgtggttaaac ... ggagtgacagGAATGTGGAGAGATGAGCGACCATCAAACAAGATACTGACAATAACAAGTT
EST: gi|116383978|gb|EG426570.1|EG426570
EST:     TGGTTCTGGTTGTGGCTCAGGGACAGGCGGCGGAAATCAGGGGCAAGGAG                         GAATGTGGAGAGATGAGCGACCATCAAACAAGATACTGACAATAACAAGTT
genomic: TGGTTCTGGTTGTGGCTCAGGGACAGGCGGCGGAAATCAGGGGCAAGGAGgtggttaaac ... ggagtgacagGAATGTGGAGAGATGAGCGACCATCAAACAAGATACTGACAATAACAAGTT
EST: gi|116387844|gb|EG430436.1|EG430436
EST:     TGGTTCTGGTTGTGGCTCAGGGACAGGCGGCGGAAATCAGGGGCAAGGAG                         GAATGTGGAGAGATGAGCGACCATCAAACAAGATACTGACAATAACAAGTT
genomic: TGGTTCTGGTTGTGGCTCAGGGACAGGCGGCGGAAATCAGGGGCAAGGAGgtggttaaac ... ggagtgacagGAATGTGGAGAGATGAGCGACCATCAAACAAGATACTGACAATAACAAGTT
EST: gi|116387843|gb|EG430435.1|EG430435
EST:     TGGTTCTGGTTGTGGCTCAGGGACAGGCGGCGGAAATCAGGGGCAAGGAG                         GAATGTGGAGAGATGAGCGACCATCAAACAAGATACTGACAATAACAAGTT
genomic: TGGTTCTGGTTGTGGCTCAGGGACAGGCGGCGGAAATCAGGGGCAAGGAGgtggttaaac ... ggagtgacagGAATGTGGAGAGATGAGCGACCATCAAACAAGATACTGACAATAACAAGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCCTCGTCCTGGCGGAGGAGGAGGTCCTGGTTCTGGTTGTGGCTCAGGGACAGGCGGCGGAAATCAGGGGCAAGGAGgtggttaaacactaaaaccagtttcttgattttcttggaattttttttttttgattctctttttttactggagtgacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG