1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtggttaaacactaaaaccagtttcttgattttcttggaattttttttttttgattctctttttttactggagtgacagGAATGTGGAGAGATGAGCGACCATCAAACAAGATACTGACAATAACAAGTTTCTCCGTGATCAAAGGGAGAGGAGAACCCTACGAATCCTCGGTCTTTGA
species | Arabidopsis thaliana |
transcript | AT2G04170.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGTTCTGGTTGTGGCTCAGGGACAGGCGGCGGAAATCAGGGGCAAGGAG GAATGTGGAGAGATGAGCGACCATCAAACAAGATACTGACAATAACAAGTTEST: gi|116389962|gb|EG432554.1|EG432554
genomic: TGGTTCTGGTTGTGGCTCAGGGACAGGCGGCGGAAATCAGGGGCAAGGAGgtggttaaac ... ggagtgacagGAATGTGGAGAGATGAGCGACCATCAAACAAGATACTGACAATAACAAGTT
EST: TGGTTCTGGTTGTGGCTCAGGGACAGGCGGCGGAAATCAGGGGCAAGGAG GAATGTGGAGAGATGAGCGACCATCAAACAAGATACTGACAATAACAAGTTEST: gi|116389958|gb|EG432550.1|EG432550
genomic: TGGTTCTGGTTGTGGCTCAGGGACAGGCGGCGGAAATCAGGGGCAAGGAGgtggttaaac ... ggagtgacagGAATGTGGAGAGATGAGCGACCATCAAACAAGATACTGACAATAACAAGTT
EST: GGACAGGCGGCGGAAATCAGGGGCAAGGAG GAATGTGGAGAGATGAGCGACCATCAAACAAGATACTGACAATAACAAGTTEST: gi|116389966|gb|EG432558.1|EG432558
genomic: GGACAGGCGGCGGAAATCAGGGGCAAGGAGgtggttaaac ... ggagtgacagGAATGTGGAGAGATGAGCGACCATCAAACAAGATACTGACAATAACAAGTT
EST: GGTTGTGGCTCAGGGACAGGCGGCGGAAATCAGTGGCAAGGAG GAATGTGGAGAGATGAGCGACCATCAAACAAGATACTGACAATAACAAGTTEST: gi|116387830|gb|EG430422.1|EG430422
genomic: GGTTGTGGCTCAGGGACAGGCGGCGGAAATCAGGGGCAAGGAGgtggttaaac ... ggagtgacagGAATGTGGAGAGATGAGCGACCATCAAACAAGATACTGACAATAACAAGTT
EST: TGGTTCTGGTTGTGGCTCAGGGACAGGCGGCGGAAATCAGGGGCAAGGAG GAATGTGGAGAGATGAGCGACCATCAAACAAGATACTGACAATAACAAGATEST: gi|116383978|gb|EG426570.1|EG426570
genomic: TGGTTCTGGTTGTGGCTCAGGGACAGGCGGCGGAAATCAGGGGCAAGGAGgtggttaaac ... ggagtgacagGAATGTGGAGAGATGAGCGACCATCAAACAAGATACTGACAATAACAAGTT
EST: TGGTTCTGGTTGTGGCTCAGGGACAGGCGGCGGAAATCAGGGGCAAGGAG GAATGTGGAGAGATGAGCGACCATCAAACAAGATACTGACAATAACAAGTTEST: gi|116387844|gb|EG430436.1|EG430436
genomic: TGGTTCTGGTTGTGGCTCAGGGACAGGCGGCGGAAATCAGGGGCAAGGAGgtggttaaac ... ggagtgacagGAATGTGGAGAGATGAGCGACCATCAAACAAGATACTGACAATAACAAGTT
EST: TGGTTCTGGTTGTGGCTCAGGGACAGGCGGCGGAAATCAGGGGCAAGGAG GAATGTGGAGAGATGAGCGACCATCAAACAAGATACTGACAATAACAAGTTEST: gi|116387843|gb|EG430435.1|EG430435
genomic: TGGTTCTGGTTGTGGCTCAGGGACAGGCGGCGGAAATCAGGGGCAAGGAGgtggttaaac ... ggagtgacagGAATGTGGAGAGATGAGCGACCATCAAACAAGATACTGACAATAACAAGTT
EST: TGGTTCTGGTTGTGGCTCAGGGACAGGCGGCGGAAATCAGGGGCAAGGAG GAATGTGGAGAGATGAGCGACCATCAAACAAGATACTGACAATAACAAGTT
genomic: TGGTTCTGGTTGTGGCTCAGGGACAGGCGGCGGAAATCAGGGGCAAGGAGgtggttaaac ... ggagtgacagGAATGTGGAGAGATGAGCGACCATCAAACAAGATACTGACAATAACAAGTT
cttgattttcttggaattttttttttttgattctctttttttactggagtgacagGAATGTGGAGAGATGAGCGACCATCAAACAAGATACTGACAATAACAAGTTTCTCCGTGATCAAAGGGAGAGGAGAACCCTACGAATCCTCGGTCTTTGA
ttttgat putative branch site (score: 4)
ttttttttttttgatt CT-rich tract
aattttttttttttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggttaaacactaaaaccagtttcttgattttcttggaattttttttttttgattctctttttttactggagtgacagGAATGTGGAGAGATGAGCGACCATCAAACAAGATACTGACAATAACAAGTTTCTCCGTGATCAAAGGGAGAGGAGAACCCTACGAATCCTCGGTCTTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA