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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTGGTCCAGGAGGTCCTGGTTTTGGTGGCCGGGGCCCGAGAGGTCCTGGTTTTGGCCCAAGAGGCCCTGGTCCTTGGAGTGGCCCAAGAGgtcctcgtcctggtggaggaggaggccctggtcctggtccttggagtggcccaagag

Basic information

species Arabidopsis thaliana
transcript AT2G04170.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116387830|gb|EG430422.1|EG430422
EST:     CCTGGTCCTTGGAGTGGCCCAAGAG                         GTCCTCGTCCTGGCGGAGGAGGAGGTCCTGGTTCTGGTTGTGGCTCAGGGA
genomic: CCTGGTCCTTGGAGTGGCCCAAGAGgtcctcgtcc ... ggcccaagagGTCCTCGTCCTGGCGGAGGAGGAGGTCCTGGTTCTGGTTGTGGCTCAGGGA
EST: gi|116387844|gb|EG430436.1|EG430436
EST:     TCCTGGTTTTGGTGGCCGGGGCCCGAGAGGTCCTGGTTTTGGCCCAAGAGGCCCTGGTCCTTGGAGTGGCCCAAGAG
genomic: TCCTGGTTTTGGTGGCCGGGGCCCGAGAGGTCCTGGTTTTGGCCCAAGAGGCCCTGGTCCTTGGAGTGGCCCAAGAG
EST: gi|116387843|gb|EG430435.1|EG430435
EST:     TCCTGGTTTTGGTGGCCGGGGCCCGAGAGGTCCTGGTTTTGGCCCAAGAGGCCCTGGTCCTTGGAGTGGCCCAAGAG
genomic: TCCTGGTTTTGGTGGCCGGGGCCCGAGAGGTCCTGGTTTTGGCCCAAGAGGCCCTGGTCCTTGGAGTGGCCCAAGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTTTGGTCCAGGAGGTCCTGGTTTTGGTGGCCGGGGCCCGAGAGGTCCTGGTTTTGGCCCAAGAGGCCCTGGTCCTTGGAGTGGCCCAAGAGgtcctcgtcctggtggaggaggaggccctggtcctggtccttggagtggcccaagag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG