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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagattgttgtatgtatttatctcatattgaagctccagtttgatttctatgaaaagtttctaatcaaaccttctctattgcaaataatagGTGATGACATCAACATCTCATGAAGGTTCAAGCGAACAACTTCGAGTCACTTCTTCAG

Basic information

species Arabidopsis thaliana
transcript AT2G03830.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116391899|gb|EG434491.1|EG434491
EST:     TTGTTACGAAAATGGCGACGCGAAAGCTCATGATCATCTCTAGTGAATAT                         GTGATGACATCAACATCTCATGAAGGTTCAAGCGAACAACTTCGAG
genomic: TTGTTACGAAAATGGCGACGCGAAAGCTCATGATCATCTCTAGTGAATATgtaagagatt ... caaataatagGTGATGACATCAACATCTCATGAAGGTTCAAGCGAACAACTTCGAG
EST: gi|116391901|gb|EG434493.1|EG434493
EST:     TTGTTACGAAAATGGCGACGCGAAAGCTCATGATCATCTCTAGTGAATAT                         GTGATGACATCAACATCTCATGAAGGTTCAAGCGAACAACTTCTAGTCACT
genomic: TTGTTACGAAAATGGCGACGCGAAAGCTCATGATCATCTCTAGTGAATATgtaagagatt ... caaataatagGTGATGACATCAACATCTCATGAAGGTTCAAGCGAACAACTTCGAGTCACT
EST: gi|116391898|gb|EG434490.1|EG434490
EST:     TTGTTACGAAAATGGCGACGCGAAAGCTCATGATCATCTCTAGTGAATAT                         GTGATGACATCAACATCTCATGAAGGTTCAAGCGAACAACTTCGAGTCACT
genomic: TTGTTACGAAAATGGCGACGCGAAAGCTCATGATCATCTCTAGTGAATATgtaagagatt ... caaataatagGTGATGACATCAACATCTCATGAAGGTTCAAGCGAACAACTTCGAGTCACT
EST: gi|116391903|gb|EG434495.1|EG434495
EST:     TTGTTACGAAAATGGCGACGCGAAAGCTCATGATCATCTCTAGTGAATAT                         GTGATGACATCAACATCTCATGAAGGTTCAAGCGAACAACTTCGAGTCACT
genomic: TTGTTACGAAAATGGCGACGCGAAAGCTCATGATCATCTCTAGTGAATATgtaagagatt ... caaataatagGTGATGACATCAACATCTCATGAAGGTTCAAGCGAACAACTTCGAGTCACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagtttgatttctatgaaaagtttctaatcaaaccttctctattgcaaataatagGTGATGACATCAACATCTCATGAAGGTTCAAGCGAACAACTTCGAGTCACTTCTTCAG
                      ttctaat  putative branch site (score: 2)
                                        tattgcaaataata  TA-rich tract