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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTAGAGTCACCCTCTTTCTTTGTGCACTAGCCATTTTATTGCTTGTAACTCCAACATCTTCTCTACAACTTAAACATCCCTACTCATCTCCTAGCCAAGgtaattaagttcactttttttgtcttaaacttttaaggtttgaatatgaagtggtaactgactttacttacaacaatacag

Basic information

species Arabidopsis thaliana
transcript AT2G03830.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116391899|gb|EG434491.1|EG434491
EST:     TCCAACATCTTCTCTACAACTTAAACATCCCTACTCATCTCCTAGCCAAG                         GTTTAAGCAAAAAGATTGTTACGAAAATGGCGACGCGAAAGCTCATGATCA
genomic: TCCAACATCTTCTCTACAACTTAAACATCCCTACTCATCTCCTAGCCAAGgtaattaagt ... aacaatacagGTTTAAGCAAAAAGATTGTTACGAAAATGGCGACGCGAAAGCTCATGATCA
EST: gi|116391900|gb|EG434492.1|EG434492
EST:     TCCAACATCTTCTCTACAACTTAAACATCCCTACTCATCTCCTAGCCAAG                         GTTTAAGCAAAAAGATTGTTACGAAAATGGCGACGCGAAAGCTCATGAT
genomic: TCCAACATCTTCTCTACAACTTAAACATCCCTACTCATCTCCTAGCCAAGgtaattaagt ... aacaatacagGTTTAAGCAAAAAGATTGTTACGAAAATGGCGACGCGAAAGCTCATGAT
EST: gi|116391901|gb|EG434493.1|EG434493
EST:     TCCAACATCTTCTCTACAACTTAAACATCCCTACTCATCTCCTAGCCAAG                         GTTTAAGCAAAAAGATTGTTACGAAAATGGCGACGCGAAAGCTCATGATCA
genomic: TCCAACATCTTCTCTACAACTTAAACATCCCTACTCATCTCCTAGCCAAGgtaattaagt ... aacaatacagGTTTAAGCAAAAAGATTGTTACGAAAATGGCGACGCGAAAGCTCATGATCA
EST: gi|116391898|gb|EG434490.1|EG434490
EST:     TCCAACATCTTCTCTACAACTTAAACATCCCTACTCATCTCCTAGCCAAG                         GTTTAAGCAAAAAGATTGTTACGAAAATGGCGACGCGAAAGCTCATGATCA
genomic: TCCAACATCTTCTCTACAACTTAAACATCCCTACTCATCTCCTAGCCAAGgtaattaagt ... aacaatacagGTTTAAGCAAAAAGATTGTTACGAAAATGGCGACGCGAAAGCTCATGATCA
EST: gi|116391903|gb|EG434495.1|EG434495
EST:     TCCAACATCTTCTCTACAACTTAAACATCCCTACTCATCTCCTAGCCAAG                         GTTTAAGCAAAAAGATTGTTACGAAAATGGCGACGCGAAAGCTCATGATCA
genomic: TCCAACATCTTCTCTACAACTTAAACATCCCTACTCATCTCCTAGCCAAGgtaattaagt ... aacaatacagGTTTAAGCAAAAAGATTGTTACGAAAATGGCGACGCGAAAGCTCATGATCA
EST: gi|116391902|gb|EG434494.1|EG434494
EST:     TCCAACATCTTCTCTACAACTTAAACATCCCTACTCATCTCCTAGCCAAG                         GTTTAAGCAAAAAGATTGTTACGAAAATGGCGACGCGAAAGCTCATGATCA
genomic: TCCAACATCTTCTCTACAACTTAAACATCCCTACTCATCTCCTAGCCAAGgtaattaagt ... aacaatacagGTTTAAGCAAAAAGATTGTTACGAAAATGGCGACGCGAAAGCTCATGATCA