1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaattaagttcactttttttgtcttaaacttttaaggtttgaatatgaagtggtaactgactttacttacaacaatacagGTTTAAGCAAAAAGATTGTTACGAAAATGGCGACGCGAAAGCTCATGATCATCTCTAGTGAATAT
species | Arabidopsis thaliana |
transcript | AT2G03830.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCAACATCTTCTCTACAACTTAAACATCCCTACTCATCTCCTAGCCAAG GTTTAAGCAAAAAGATTGTTACGAAAATGGCGACGCGAAAGCTCATGATCAEST: gi|116391900|gb|EG434492.1|EG434492
genomic: TCCAACATCTTCTCTACAACTTAAACATCCCTACTCATCTCCTAGCCAAGgtaattaagt ... aacaatacagGTTTAAGCAAAAAGATTGTTACGAAAATGGCGACGCGAAAGCTCATGATCA
EST: TCCAACATCTTCTCTACAACTTAAACATCCCTACTCATCTCCTAGCCAAG GTTTAAGCAAAAAGATTGTTACGAAAATGGCGACGCGAAAGCTCATGATEST: gi|116391901|gb|EG434493.1|EG434493
genomic: TCCAACATCTTCTCTACAACTTAAACATCCCTACTCATCTCCTAGCCAAGgtaattaagt ... aacaatacagGTTTAAGCAAAAAGATTGTTACGAAAATGGCGACGCGAAAGCTCATGAT
EST: TCCAACATCTTCTCTACAACTTAAACATCCCTACTCATCTCCTAGCCAAG GTTTAAGCAAAAAGATTGTTACGAAAATGGCGACGCGAAAGCTCATGATCAEST: gi|116391898|gb|EG434490.1|EG434490
genomic: TCCAACATCTTCTCTACAACTTAAACATCCCTACTCATCTCCTAGCCAAGgtaattaagt ... aacaatacagGTTTAAGCAAAAAGATTGTTACGAAAATGGCGACGCGAAAGCTCATGATCA
EST: TCCAACATCTTCTCTACAACTTAAACATCCCTACTCATCTCCTAGCCAAG GTTTAAGCAAAAAGATTGTTACGAAAATGGCGACGCGAAAGCTCATGATCAEST: gi|116391903|gb|EG434495.1|EG434495
genomic: TCCAACATCTTCTCTACAACTTAAACATCCCTACTCATCTCCTAGCCAAGgtaattaagt ... aacaatacagGTTTAAGCAAAAAGATTGTTACGAAAATGGCGACGCGAAAGCTCATGATCA
EST: TCCAACATCTTCTCTACAACTTAAACATCCCTACTCATCTCCTAGCCAAG GTTTAAGCAAAAAGATTGTTACGAAAATGGCGACGCGAAAGCTCATGATCAEST: gi|116391902|gb|EG434494.1|EG434494
genomic: TCCAACATCTTCTCTACAACTTAAACATCCCTACTCATCTCCTAGCCAAGgtaattaagt ... aacaatacagGTTTAAGCAAAAAGATTGTTACGAAAATGGCGACGCGAAAGCTCATGATCA
EST: TCCAACATCTTCTCTACAACTTAAACATCCCTACTCATCTCCTAGCCAAG GTTTAAGCAAAAAGATTGTTACGAAAATGGCGACGCGAAAGCTCATGATCA
genomic: TCCAACATCTTCTCTACAACTTAAACATCCCTACTCATCTCCTAGCCAAGgtaattaagt ... aacaatacagGTTTAAGCAAAAAGATTGTTACGAAAATGGCGACGCGAAAGCTCATGATCA
aaacttttaaggtttgaatatgaagtggtaactgactttacttacaacaatacagGTTTAAGCAAAAAGATTGTTACGAAAATGGCGACGCGAAAGCTCATGATCATCTCTAGTGAATAT
tacttac putative branch site (score: 1)
tttgaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattaagttcactttttttgtcttaaacttttaaggtttgaatatgaagtggtaactgactttacttacaacaatacagGTTTAAGCAAAAAGATTGTTACGAAAATGGCGACGCGAAAGCTCATGATCATCTCTAGTGAATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA