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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAGGTCATTCTCATGAATGCTCGAGATGCATCTGTTGTTCAGTACCAGTCGGAACTGTGTAAACGCCTTCAATCAAACCACAACCTAAATGTTAAAGgtcagtggttttggtatagctttggtggtctggagttatgatatagattagattgctgatgaaactgttatatgtgtttggttttag

Basic information

species Arabidopsis thaliana
transcript AT2G03620.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116398521|gb|EG441113.1|EG441113
EST:     GTCGGAACTGTGTAAACGCCTTCAATCAAACCACAACCTAAATGTTAAAG                         ATGATTTGCCAT
genomic: GTCGGAACTGTGTAAACGCCTTCAATCAAACCACAACCTAAATGTTAAAGgtcagtggtt ... ttggttttagATGATTTGCCAT
EST: gi|116400873|gb|EG443465.1|EG443465
EST:     GTCGGAACTGTGTAAACGCCTTCAATCAAACCACAACCTAAATGTTAAAG                         ATGATTTGCCATTTGAATTTAAAGCGTTGGAGCTGGTTTTGGAACTATCTT
genomic: GTCGGAACTGTGTAAACGCCTTCAATCAAACCACAACCTAAATGTTAAAGgtcagtggtt ... ttggttttagATGATTTGCCATTTGAATTTAAAGCGTTGGAGCTGGTTTTGGAACTATCTT
EST: gi|116400870|gb|EG443462.1|EG443462
EST:     GTCGGAACTGTGTAAACGCCTTCAATCAAACCACAACCTAAATGTTAAAG                         ATGATTTGCCATTTGAATTTAAAGCGTTGGAGCTGGTTTTGGAACTATCTT
genomic: GTCGGAACTGTGTAAACGCCTTCAATCAAACCACAACCTAAATGTTAAAGgtcagtggtt ... ttggttttagATGATTTGCCATTTGAATTTAAAGCGTTGGAGCTGGTTTTGGAACTATCTT
EST: gi|116400869|gb|EG443461.1|EG443461
EST:     GTCGGAACTGTGTAAACGCCTTCAATCAAACCACAACCTAAATG-TAAAG                         ATGATTTGCCATTTGAATTTAAAGCGTTGGAGCTGGTTTTGGAACTATCTT
genomic: GTCGGAACTGTGTAAACGCCTTCAATCAAACCACAACCTAAATGTTAAAGgtcagtggtt ... ttggttttagATGATTTGCCATTTGAATTTAAAGCGTTGGAGCTGGTTTTGGAACTATCTT
EST: gi|116400874|gb|EG443466.1|EG443466
EST:     GTCGGAACTGTGTAAACGCCTTCAATCAAACCACAACCTAAATGTTAAAG                         ATGATTTGCCATTTGAATTTAAAGCGTTGGAGCTGGTTTTGGAACTATCTT
genomic: GTCGGAACTGTGTAAACGCCTTCAATCAAACCACAACCTAAATGTTAAAGgtcagtggtt ... ttggttttagATGATTTGCCATTTGAATTTAAAGCGTTGGAGCTGGTTTTGGAACTATCTT