1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtcagtggttttggtatagctttggtggtctggagttatgatatagattagattgctgatgaaactgttatatgtgtttggttttagATGATTTGCCATTTGAATTTAAAGCGTTGGAGCTGGTTTTGGAACTATCTTGCTTGTCTTTAGATGCACAG
species | Arabidopsis thaliana |
transcript | AT2G03620.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTCGGAACTGTGTAAACGCCTTCAATCAAACCACAACCTAAATGTTAAAG ATGATTTGCCATEST: gi|116400873|gb|EG443465.1|EG443465
genomic: GTCGGAACTGTGTAAACGCCTTCAATCAAACCACAACCTAAATGTTAAAGgtcagtggtt ... ttggttttagATGATTTGCCAT
EST: GTCGGAACTGTGTAAACGCCTTCAATCAAACCACAACCTAAATGTTAAAG ATGATTTGCCATTTGAATTTAAAGCGTTGGAGCTGGTTTTGGAACTATCTTEST: gi|116400870|gb|EG443462.1|EG443462
genomic: GTCGGAACTGTGTAAACGCCTTCAATCAAACCACAACCTAAATGTTAAAGgtcagtggtt ... ttggttttagATGATTTGCCATTTGAATTTAAAGCGTTGGAGCTGGTTTTGGAACTATCTT
EST: GTCGGAACTGTGTAAACGCCTTCAATCAAACCACAACCTAAATGTTAAAG ATGATTTGCCATTTGAATTTAAAGCGTTGGAGCTGGTTTTGGAACTATCTTEST: gi|116400869|gb|EG443461.1|EG443461
genomic: GTCGGAACTGTGTAAACGCCTTCAATCAAACCACAACCTAAATGTTAAAGgtcagtggtt ... ttggttttagATGATTTGCCATTTGAATTTAAAGCGTTGGAGCTGGTTTTGGAACTATCTT
EST: GTCGGAACTGTGTAAACGCCTTCAATCAAACCACAACCTAAATG-TAAAG ATGATTTGCCATTTGAATTTAAAGCGTTGGAGCTGGTTTTGGAACTATCTTEST: gi|116400874|gb|EG443466.1|EG443466
genomic: GTCGGAACTGTGTAAACGCCTTCAATCAAACCACAACCTAAATGTTAAAGgtcagtggtt ... ttggttttagATGATTTGCCATTTGAATTTAAAGCGTTGGAGCTGGTTTTGGAACTATCTT
EST: GTCGGAACTGTGTAAACGCCTTCAATCAAACCACAACCTAAATGTTAAAG ATGATTTGCCATTTGAATTTAAAGCGTTGGAGCTGGTTTTGGAACTATCTT
genomic: GTCGGAACTGTGTAAACGCCTTCAATCAAACCACAACCTAAATGTTAAAGgtcagtggtt ... ttggttttagATGATTTGCCATTTGAATTTAAAGCGTTGGAGCTGGTTTTGGAACTATCTT
gagttatgatatagattagattgctgatgaaactgttatatgtgtttggttttagATGATTTGCCATTTGAATTTAAAGCGTTGGAGCTGGTTTTGGAACTATCTTGCTTGTCTTTAGATGCACAG
tgctgat putative branch site (score: 3)
atatagattagatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtggttttggtatagctttggtggtctggagttatgatatagattagattgctgatgaaactgttatatgtgtttggttttagATGATTTGCCATTTGAATTTAAAGCGTTGGAGCTGGTTTTGGAACTATCTTGCTTGTCTTTAGATGCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT