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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgaaacatactactcttcctttaccctaacagatataactgatatgtatatatgttctctgaagattcatgattggcattgaggacagGTCTTTGGCAAAAGCACAATAATCGGATTGGTGATAACTTTCTTTGCCGGTATCTGCTTTTCTCTGTTCTCACCTGCATTCAACTTAGCAACAAACGATC

Basic information

species Arabidopsis thaliana
transcript AT2G03590.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116439987|gb|EG482579.1|EG482579
EST:     AAGGGACTGCAGCTTTTCTCATAGAGCTTGAGAAGCAAAGAGCTATAAAG                         GTCTTTGGCAAAAGCACAATAATCGGATTGGTGATAACTTTCTTTGCCGGT
genomic: AAGGGACTGCAGCTTTTCTCATAGAGCTTGAGAAGCAAAGAGCTATAAAGgttgaaacat ... ttgaggacagGTCTTTGGCAAAAGCACAATAATCGGATTGGTGATAACTTTCTTTGCCGGT
EST: gi|116439995|gb|EG482587.1|EG482587
EST:     AAGGGACTGCAGCTTTTCTCATAGAGCTTGAGAAGCAAAGAGCTATAAAG                         GTCTTTGGCAAAAGCACAATAATCGGATTGGTGATAACTTTCTTTGCCGGT
genomic: AAGGGACTGCAGCTTTTCTCATAGAGCTTGAGAAGCAAAGAGCTATAAAGgttgaaacat ... ttgaggacagGTCTTTGGCAAAAGCACAATAATCGGATTGGTGATAACTTTCTTTGCCGGT
EST: gi|116439988|gb|EG482580.1|EG482580
EST:     AAGGGACTGCAGCTTTTCTCATAGAGCTTGAGAAGCAAAGAGCTATAAAG                         GTCTTTGGCAAAAGCACAATAATCGGATTGGTGATAACTTTCTTTGCCGGT
genomic: AAGGGACTGCAGCTTTTCTCATAGAGCTTGAGAAGCAAAGAGCTATAAAGgttgaaacat ... ttgaggacagGTCTTTGGCAAAAGCACAATAATCGGATTGGTGATAACTTTCTTTGCCGGT
EST: gi|116439992|gb|EG482584.1|EG482584
EST:     AAGGGACTGCAGCTTTTCTCATAGAGCTTGAGAAGCAAAGAGCTATAAAG                         GTCTTTGGCAAAAGCACAATAATCGGATTGGTGATAACTTTCTTTGCCGGT
genomic: AAGGGACTGCAGCTTTTCTCATAGAGCTTGAGAAGCAAAGAGCTATAAAGgttgaaacat ... ttgaggacagGTCTTTGGCAAAAGCACAATAATCGGATTGGTGATAACTTTCTTTGCCGGT
EST: gi|116439990|gb|EG482582.1|EG482582
EST:     AAGGGACTGCAGCTTTTCTCATAGAGCTTGAGAAGCAAAGAGCTATAAAG                         GTCTTTGGCAAAAGCACAATAATCGGATTGGTGATAACTTTCTTTGCCGGT
genomic: AAGGGACTGCAGCTTTTCTCATAGAGCTTGAGAAGCAAAGAGCTATAAAGgttgaaacat ... ttgaggacagGTCTTTGGCAAAAGCACAATAATCGGATTGGTGATAACTTTCTTTGCCGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tataactgatatgtatatatgttctctgaagattcatgattggcattgaggacagGTCTTTGGCAAAAGCACAATAATCGGATTGGTGATAACTTTCTTTGCCGGTATCTGCTTTTCTCTGTTCTCACCTGCATTCAACTTAGCAACAAACGATC
   aactgat  putative branch site (score: 3)
        atatgtatatatgtt  TA-rich tract