1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCCCGGGGGTCGCTTGTTTCTTGATCGCTGTTTGTTTCGGTTCCGCTGTTCATAAATCCAATGCTGCTGATAACAAAACCAAACTCCAAAATTTCAAAAGgtttgaaaaagattcatatctattgttgtttccgtttggtttggtttggtactaatcttgatcttgtttcag
species | Arabidopsis thaliana |
transcript | AT2G03590.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CATAAATCCAATGCTGCTGATAACAAAACCAAACTCCAAAATTTCAAAAG TTTAGAGACTACTTCTTCCTTCGAAATGGAAACAATTTCTGCAAGCAACGGEST: gi|116439995|gb|EG482587.1|EG482587
genomic: CATAAATCCAATGCTGCTGATAACAAAACCAAACTCCAAAATTTCAAAAGgtttgaaaaa ... cttgtttcagTTTAGAGACTACTTCTTCCTTCGAAATGGAAACAATTTCTGCAAGCAACGG
EST: CATAAATCCAATGCTGCTGATAACAAAACCAAACTCCAAAATTTCAAAAG TTTAGAGACTACTTCTTCCTTCGAAATGGAAACAATTTCTGCAAGCAACGGEST: gi|116439988|gb|EG482580.1|EG482580
genomic: CATAAATCCAATGCTGCTGATAACAAAACCAAACTCCAAAATTTCAAAAGgtttgaaaaa ... cttgtttcagTTTAGAGACTACTTCTTCCTTCGAAATGGAAACAATTTCTGCAAGCAACGG
EST: CATAAATCCAATGCTGCTGATAACAAAACCAAACTCCAAAATTTC-AAA- ---AGAGACTACTTCTTCCTTCGAAATGGAAACAATTTCTGCAAGCAACGGEST: gi|116439992|gb|EG482584.1|EG482584
genomic: CATAAATCCAATGCTGCTGATAACAAAACCAAACTCCAAAATTTCAAAAGgtttgaaaaa ... cttgtttcagTTTAGAGACTACTTCTTCCTTCGAAATGGAAACAATTTCTGCAAGCAACGG
EST: CATAAATCCAATGCTGCTGATAACAAAACCAAACTCCAAAATTTCAAAAG TTTAGAGATTACTTCTTCCTTCGAAATGGAAACAATTTCTGCAAGCAACGGEST: gi|116439990|gb|EG482582.1|EG482582
genomic: CATAAATCCAATGCTGCTGATAACAAAACCAAACTCCAAAATTTCAAAAGgtttgaaaaa ... cttgtttcagTTTAGAGACTACTTCTTCCTTCGAAATGGAAACAATTTCTGCAAGCAACGG
EST: CATAAATCCAATGCTGCTGATAACAAAACCAAACTCCAAAATTTCAAAAG TTTAGAGACTACTTCTTCCTTCGAAATGGAAACAATTTCTGCAAGCAACGG
genomic: CATAAATCCAATGCTGCTGATAACAAAACCAAACTCCAAAATTTCAAAAGgtttgaaaaa ... cttgtttcagTTTAGAGACTACTTCTTCCTTCGAAATGGAAACAATTTCTGCAAGCAACGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCCGGGGGTCGCTTGTTTCTTGATCGCTGTTTGTTTCGGTTCCGCTGTTCATAAATCCAATGCTGCTGATAACAAAACCAAACTCCAAAATTTCAAAAGgtttgaaaaagattcatatctattgttgtttccgtttggtttggtttggtactaatcttgatcttgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT