Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtcacatcttcttacttctccttagacatcttgtcgaaaactattgtataaccgcggtttttttttttatcatagGATAATTGGCAGTCAGTGATGTTTGCAATGGCTGGAGGAATAGTTCTTAGCCTTGGAAACTTAGCAACACAATATGCTTGGGCTTATGTTGGTTTATCAG

Basic information

species Arabidopsis thaliana
transcript AT2G03590.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G03590.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA02G12980.1 (Glycine max), 3'ss of exon 1
------------------gtcagtcac-atcttcttacttctccttagaca--tcttgtcgaaaactattgtataaccgcggtttttttttttatcatagGATAATTGGCAGTCAGTGATGTTTGCAATGGCTGGAGGAATAGTTCTTAGCCTTGGAAACTTAGCAACACAATATGCTTGGGCTTATGTTGGTTTATCAG
                   |||| |   | |||  || ||    |  |||   ||||||  || | |  | ||| |  | ||| ||  | |||     ||||||| ||||  || ||  ||||||| ||||  || ||| | || |||||  ||||||| ||  ||||||||||||||||||||| ||||||||||||||
gttgaatagcagcatattttcagccttgaactttatattttatttgtgactattcttgtttaagagtggtttatgaatgtggtattgatatttgatgcagGATAACTGGCCTTCTGTTCTGTTTGCCATGGGGGGTGGAGTGGTCCTTAGTGTTGGAAATTTGTCAACACAATATGCTTGGGCTTTTGTTGGTTTATCAG

upper sequence: AT2G03590.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv01s0011g00530.t01 (Vitis vinifera), 3'ss of exon 1
------------------gtcagtcacatcttcttacttctccttagacatct-tgtcgaaaactattgtataaccgcggtttttt----tttttatcatagGATAATTGGCAGTCAGTGATGTTTGCAATGGCTGGAGGAATAGTTCTTAGCCTTGGAAACTTAGCAACACAATATGCTTGGGCTTATGTTGGTTTATCAG
                   | ||| |  |  | ||||| ||  |||| | ||| | || |  |||||             | || |    |  ||     |||| |||||||  |   |  |||| |||||||| |||||  | || || |||||||||||| |  | ||||| ||||| ||||||| ||||||||||||||
aaataccatgataccgggtttagttatgtaatattactact--ttagtcctctgtatcaattactataactggttttgaatcttctaaaatgattgatgcagGACAATTGGCCCTGCATTTTGTTAGCAATGGCAGGAGGGGTGGTCCTCAGCCTTGGAAACCTGTCCACACAGTATGCGTGGGCTTTTGTTGGTTTATCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19876936|gb|AU237767.1|AU237767
EST:     TAGGAGAAATAGGTCCGAGCAGACCAAATTTCTTTACACAGCTCTCTCAA                         GATAATTGGCAGTCAGTGATGTTTGCAATGGCTGGAGGAATAGTTCTTA
genomic: TAGGAGAAATAGGTCCGAGCAGACCAAATTTCTTTACACAGCTCTCTCAAgtcagtcaca ... tttatcatagGATAATTGGCAGTCAGTGATGTTTGCAATGGCTGGAGGAATAGTTCTTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttagacatcttgtcgaaaactattgtataaccgcggtttttttttttatcatagGATAATTGGCAGTCAGTGATGTTTGCAATGGCTGGAGGAATAGTTCTTAGCCTTGGAAACTTAGCAACACAATATGCTTGGGCTTATGTTGGTTTATCAG
                         gtataac  putative branch site (score: 3)
                                     tttttttttttatcat  putative PPT
                                     tttttttttttatcat  TA-rich tract