1 5' 3' | 2 5' 3' | 3 5' 3' |
CCCTAGCCGGTTCCAACGAAGAGTCTTGGTGCCAAGGCTTGGATGGATTGGCCTCACGCTCTGCTGAGTACTACAAGCAAGGCGCTCGTTTTGCCAAGTGgtatgtcatatatttcaccatgttatcttacatatggtattaactctttggtttgatgtgaaaatgctcttcctagttttgatgtttgtgtgtgtttgtctag
species | Arabidopsis thaliana |
transcript | AT2G01140.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAAGCAAGGCGCTCGTTTTGCCAAGTG GAGGACAGTGGTGAGTGTTCCCTGCGGTCCTTCAGCACTGGEST: gi|116486331|gb|EG528923.1|EG528923
genomic: CAAGCAAGGCGCTCGTTTTGCCAAGTGgtatgtcata ... gtttgtctagGAGGACAGTGGTGAGTGTTCCCTGCGGTCCTTCAGCACTGG
EST: GCCTCACGCTCTGCTGAGTACTACAAGCAAGGCGCTCGTTTTGCCAAGTG GAGGACAGTGGTGAGTGTTCCCTGCGGTCCTTCAGCACTGGCTGTGAAGGAEST: gi|47831930|gb|CK121614.1|CK121614
genomic: GCCTCACGCTCTGCTGAGTACTACAAGCAAGGCGCTCGTTTTGCCAAGTGgtatgtcata ... gtttgtctagGAGGACAGTGGTGAGTGTTCCCTGCGGTCCTTCAGCACTGGCTGTGAAGGA
EST: GCCTCACGCTCTGCTGAGTACTACAAGCAAGGCGCTCGTTTTGCCAAGTG GAGGACAGTGGTGAGTGTTCCCTGCGGTCCTTCAGCACTGGCTGTGAAGGAEST: gi|116486329|gb|EG528921.1|EG528921
genomic: GCCTCACGCTCTGCTGAGTACTACAAGCAAGGCGCTCGTTTTGCCAAGTGgtatgtcata ... gtttgtctagGAGGACAGTGGTGAGTGTTCCCTGCGGTCCTTCAGCACTGGCTGTGAAGGA
EST: GCCTCACGCTCTGCTGAGTACTACAAGCAAGGCGCTCGTTTTGCCAAGTG GAGGACAGTGGTGAGTGTTCCCTGCGGTCCTTCAGCACTGGCTGTGAAGGAEST: gi|125014510|gb|EL086779.1|EL086779
genomic: GCCTCACGCTCTGCTGAGTACTACAAGCAAGGCGCTCGTTTTGCCAAGTGgtatgtcata ... gtttgtctagGAGGACAGTGGTGAGTGTTCCCTGCGGTCCTTCAGCACTGGCTGTGAAGGA
EST: GCCTCACGCTCTGCTGAGTACTACAAGCAAGGCGCTCGTTTTGCCAAGTG GAGGACAGTGGTGAGTGTTCCCTGCGGTCCTTEST: gi|125249298|gb|EL263383.1|EL263383
genomic: GCCTCACGCTCTGCTGAGTACTACAAGCAAGGCGCTCGTTTTGCCAAGTGgtatgtcata ... gtttgtctagGAGGACAGTGGTGAGTGTTCCCTGCGGTCCTT
EST: GCCTCACGCTCTGCTGAGTACTACAAGCAAGGCGCTCGTTTTGCCAAGTG GAGGACAGTGGTGAGTGTTCCCTGCGGTCCTTCAGCACTGGCT
genomic: GCCTCACGCTCTGCTGAGTACTACAAGCAAGGCGCTCGTTTTGCCAAGTGgtatgtcata ... gtttgtctagGAGGACAGTGGTGAGTGTTCCCTGCGGTCCTTCAGCACTGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCTAGCCGGTTCCAACGAAGAGTCTTGGTGCCAAGGCTTGGATGGATTGGCCTCACGCTCTGCTGAGTACTACAAGCAAGGCGCTCGTTTTGCCAAGTGgtatgtcatatatttcaccatgttatcttacatatggtattaactctttggtttgatgtgaaaatgctcttcctagttttgatgtttgtgtgtgtttgtctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG