Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCTTCGAGGAGACTCTTTACCAGTCCACCAAGGACGGTAAGACCTTTGTCGATTGCTTGCGCGATGCCAACATCGTCCCTGGCATCAAAGTTGACAAGgtattttttatccatttattctgtcatcatcatcataagtagttgagtttttatgtgtgttgagtgaagtgttgacaatgcaatccaccgcgtag

Basic information

species Arabidopsis thaliana
transcript AT2G01140.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164139866|gb|ES015555.1|ES015555
EST:     AAGTTGACAAG                         GGCTTGTCTCCCCTAGCCGGTTCCAACGAAGAGTCTTGGTGCCAAGGCTTG
genomic: AAGTTGACAAGgtatttttta ... caccgcgtagGGCTTGTCTCCCCTAGCCGGTTCCAACGAAGAGTCTTGGTGCCAAGGCTTG
EST: gi|164208559|gb|ES085760.1|ES085760
EST:     TCGATTGCTTGCGCGATGCCAACATCGTCCCTGGCATCAAAGTTG-CAAG                         GGCTTGTNTCCCCTAGCCGGTTCCAACGAAGAGTCTTGGTGCC
genomic: TCGATTGCTTGCGCGATGCCAACATCGTCCCTGGCATCAAAGTTGACAAGgtatttttta ... caccgcgtagGGCTTGTCTCCCCTAGCCGGTTCCAACGAAGAGTCTTGGTGCC
EST: gi|116486331|gb|EG528923.1|EG528923
EST:     TCGATTGCTTGCGCGATGCCAACATCGTCCCTGGCATCAAAGTTGACAAG                         GGCTTGTCTCCCCTAGCCGGTTCCAACGAAGAGTCTTGGTGCCAAGGCTTG
genomic: TCGATTGCTTGCGCGATGCCAACATCGTCCCTGGCATCAAAGTTGACAAGgtatttttta ... caccgcgtagGGCTTGTCTCCCCTAGCCGGTTCCAACGAAGAGTCTTGGTGCCAAGGCTTG
EST: gi|47831930|gb|CK121614.1|CK121614
EST:     TCGATTGCTTGCGCGATGCCAACATCGTCCCTGGCATCAAAGTTGACAAG                         GGCTTGTCTCCCCTAGCCGGTTCCAACGAAGAGTCTTGGTGCCAAGGCTTG
genomic: TCGATTGCTTGCGCGATGCCAACATCGTCCCTGGCATCAAAGTTGACAAGgtatttttta ... caccgcgtagGGCTTGTCTCCCCTAGCCGGTTCCAACGAAGAGTCTTGGTGCCAAGGCTTG
EST: gi|124762231|gb|EH852361.1|EH852361
EST:     TCGATTGCTTGCGCGATGCCAACATCATCCCTGGCATCAAAGTTGACAAG                         GGCTTGTCTCCCCTAGCCGGTTCC
genomic: TCGATTGCTTGCGCGATGCCAACATCGTCCCTGGCATCAAAGTTGACAAGgtatttttta ... caccgcgtagGGCTTGTCTCCCCTAGCCGGTTCC
EST: gi|164037603|gb|ES131258.1|ES131258
EST:     CCAACATCGTCCCTGGCATCAAAGTTGACAAG                         GGCTTGTCTCCCCTAGCCGGTTCCAACGAAGAGTCTTGGTGCCAAGGCTTG
genomic: CCAACATCGTCCCTGGCATCAAAGTTGACAAGgtatttttta ... caccgcgtagGGCTTGTCTCCCCTAGCCGGTTCCAACGAAGAGTCTTGGTGCCAAGGCTTG
EST: gi|116486329|gb|EG528921.1|EG528921
EST:     TCGATTGCTTGCGCGATGCCAACATCGTCCCTGGCATCAAAGTTGACAAG                         GGCTTGTCTCCCCTAGCCGGTTCCAACGAAGAGTCTTGGTGCCAAGGCTTG
genomic: TCGATTGCTTGCGCGATGCCAACATCGTCCCTGGCATCAAAGTTGACAAGgtatttttta ... caccgcgtagGGCTTGTCTCCCCTAGCCGGTTCCAACGAAGAGTCTTGGTGCCAAGGCTTG