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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGCTCCTTTGCTCACACCTCTGCTTCTTCTTCTCCTCCTCCTCGAGTCTCCTTCGCGATCCGCGCCGGTGCTTACTCCGACGAGCTTGTTAAAACCGCCgtgagtatcctccttatcctctctctctctttgatgctttattagtttggattcgtttccgtaattctcaaagtcaaacgtagagtgagattctctgattattgcgtaatag

Basic information

species Arabidopsis thaliana
transcript AT2G01140.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125090034|gb|EL148180.1|EL148180
EST:     CCTTCGCGATCCGCGCCGGTGCTTACTCCGACGAGCTTGTTAAAACCGCC                         AAAAGCATTGCATCCCCTGGGAGAGGTATCTTGGCGATC
genomic: CCTTCGCGATCCGCGCCGGTGCTTACTCCGACGAGCTTGTTAAAACCGCCgtgagtatcc ... tgcgtaatagAAAAGCATTGCATCCCCTGGGAGAGGTATCTTGGCGATC
EST: gi|164159351|gb|ES161388.1|ES161388
EST:     CTTACTCCGACGAGCTTGTTAAAACCGCC                         AAAAGCATTGCATCCCCTGGGAGAGGTATCTTGGCGATCGATGAAGTCCAA
genomic: CTTACTCCGACGAGCTTGTTAAAACCGCCgtgagtatcc ... tgcgtaatagAAAAGCATTGCATCCCCTGGGAGAGGTATCTTGGCGATCGATGA-GTCCAA
EST: gi|47831930|gb|CK121614.1|CK121614
EST:     CCTTCGCGATCCGCGCCGGTGCTTACTCCGACGAGCTTGTTAAAACCGCC                         AAAAGCATTGCATCCCCTGGGAGAGGTATCTTGGCGATCGATGAGTCCAAT
genomic: CCTTCGCGATCCGCGCCGGTGCTTACTCCGACGAGCTTGTTAAAACCGCCgtgagtatcc ... tgcgtaatagAAAAGCATTGCATCCCCTGGGAGAGGTATCTTGGCGATCGATGAGTCCAAT
EST: gi|125264717|gb|EL278802.1|EL278802
EST:     CCTTCGCGATCCGCGCCGGTGCTTACTCCGACGAGCTTGTTAAAACCGCC                         AAAAGCATTGCATCCCCTGG
genomic: CCTTCGCGATCCGCGCCGGTGCTTACTCCGACGAGCTTGTTAAAACCGCCgtgagtatcc ... tgcgtaatagAAAAGCATTGCATCCCCTGG
EST: gi|164195890|gb|ES038487.1|ES038487
EST:     CCTTCGCGATCCGCGCCGGTGCTTACTCCGACGAGCTTGTTAAAACCGCC                         AAAAGCATTGCATACCCCTGGGAGAGGTATCTTGGCGATCGATG
genomic: CCTTCGCGATCCGCGCCGGTGCTTACTCCGACGAGCTTGTTAAAACCGCCgtgagtatcc ... tgcgtaatagAAAAGCATTGCAT-CCCCTGGGAGAGGTATCTTGGCGATCGATG
EST: gi|116486329|gb|EG528921.1|EG528921
EST:     CCTTCGCGATCCGCGCCGGTGCTTACTCCGACGAGCTTGTTAAAACCGCC                         AAAAGCATTGCATCCCCTGGGAGAGGTATCTTGGCGATCGATGAGTCCAAT
genomic: CCTTCGCGATCCGCGCCGGTGCTTACTCCGACGAGCTTGTTAAAACCGCCgtgagtatcc ... tgcgtaatagAAAAGCATTGCATCCCCTGGGAGAGGTATCTTGGCGATCGATGAGTCCAAT
EST: gi|164057704|gb|ES074809.1|ES074809
EST:     CCTTCGCGATCCGCGCCGGTGCTTACTCCGACGAGCTTGTTAAAACCGCC                         AAAAGCATTGCATCCCCTGGGAGAGGTATCTTGGCGATCGATG
genomic: CCTTCGCGATCCGCGCCGGTGCTTACTCCGACGAGCTTGTTAAAACCGCCgtgagtatcc ... tgcgtaatagAAAAGCATTGCATCCCCTGGGAGAGGTATCTTGGCGATCGATG
EST: gi|164160248|gb|ES069582.1|ES069582
EST:     CTTACTCCGACGAGCTTGTTAAAACCGCC                         AAAAGCATTGCATCCCCTGGTAGAGGTATCTTGGCGATCGATGAGTCCAAT
genomic: CTTACTCCGACGAGCTTGTTAAAACCGCCgtgagtatcc ... tgcgtaatagAAAAGCATTGCATCCCCTGGGAGAGGTATCTTGGCGATCGATGAGTCCAAT
EST: gi|124811907|gb|EH896773.1|EH896773
EST:     CTTCGCGATCCGCGCCGGTGCTTACTCCGACGAGCTTGTTAAAACCGACC                         AAAAGCATTGCATCCCCTGGGAGAGGTA
genomic: CTTCGCGATCCGCGCCGGTGCTTACTCCGACGAGCTTGTTAAAACCG-CCgtgagtatcc ... tgcgtaatagAAAAGCATTGCATCCCCTGGGAGAGGTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACGCTCCTTTGCTCACACCTCTGCTTCTTCTTCTCCTCCTCCTCGAGTCTCCTTCGCGATCCGCGCCGGTGCTTACTCCGACGAGCTTGTTAAAACCGCCgtgagtatcctccttatcctctctctctctttgatgctttattagtttggattcgtttccgtaattctcaaagtcaaacgtagagtgagattctctgattattgcgtaatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT