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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccatcctgtcaagcctgatttgatgctgatttagtaaactcaaatcttacctctaggaaacaaactgctcaactaaaactggctttgtttcaagctaggaaaaaagaagctccttctttcttggaatatacccagcttgcttgcctgatgatttgtccccgtgcagGTGTATTTCAAAGCAACAGATCCATTCAATGAACGATGGCAGACTGCTTGGACTATAACTGCCTTCTGGGATGTTATCGCATTCTTGTTGCTATGTATTA

Basic information

species Arabidopsis thaliana
transcript AT2G01070.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G01070.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G064366_T01 (Zea mays), 3'ss of exon 3
gtaccatcctgtcaagcctgatttgatgctgatttagtaaactcaaatcttacctctaggaaacaaactgctca-actaaaactggctttgtttcaagctaggaaaaaagaagctccttctttcttggaatatacccagcttgcttgcctgatgatttgtccccgtgcagGTGTATTTCAAAGCAACAGATCCATTCAATGAACGATGGCAGACTGCTTGGACTATAACTGCCTTCTGGGATGTTATCGCATTCTTGTTGCTATGTATTA
                                                                     | | | | | ||||||||||  ||||    |  || ||    |  |  |      |    || |      | |  |||  |  |||| ||||    ||||||| ||||||||||| ||||| || |||| |||  | |||||||  || ||||  ||||||||||||||||||||  | || ||  |||||||   | | |
---------------------------------------------------------------------gataatatttaaactggcttaatttctttttccgagaatcctaagttttgaaccttgtagatttgaatcacctagttgt-tactgatgtgtcattttgcagGTCTATTTCAAAGCGACAGACCCCTTCAGTGAGAGGTGGCAGAGCGCATGGATCATAACTGCCTTCTGGGATGTCCTTGCGTTTGTGTTGCTTCTTGTGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttctttcttggaatatacccagcttgcttgcctgatgatttgtccccgtgcagGTGTATTTCAAAGCAACAGATCCATTCAATGAACGATGGCAGACTGCTTGGACTATAACTGCCTTCTGGGATGTTATCGCATTCTTGTTGCTATGTATTA
                               gcctgat  putative branch site (score: 4)
                                        tttgtcccc  putative PPT
             aatata  TA-rich tract