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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGATCAAAACTTTTTCTTGTCCTTCCTGACGCCTTCCTCGATGCATTTCTCATATTGTGGATATTTACCTCTCTTTCGAAAACACTGGAACAGTTACAGgtatctctttctttctaaatatagccatcagactctgtaagttgtaagggttttgaggcaagattcatcagaccagctataaaattctttattactgcag

Basic information

species Arabidopsis thaliana
transcript AT2G01070.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G01070.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA08G19670.1 (Glycine max), 5'ss of exon 2
AAGATCAAAACTTTTTCTTGTCCTTCCTGACGCCTTCCTCGATGCATTTCTCATATTGTGGATATTTACCTCTCTTTCGAAAACACTGGAACAGTTACAGgtatctctttct----ttctaaatatagccatcagactctgtaagttgtaagggttttgaggcaagattcatcagaccagctataaaattctttattac-tgcag-----------------------
|||  |||  ||  |||| || |||||||| || ||| | ||||||||| | ||||| ||||| ||||| |||||||| | ||||||||| ||||||||||||||| || ||    |||| | |||      |||  ||| ||| ||       ||||||  |       |||   |   || ||| ||  || |||   ||                          
AAGGGCAAGGCTCCTTCTAGTTCTTCCTGATGCTTTCTTAGATGCATTTTTGATATTATGGATTTTTACATCTCTTTCAAGAACACTGGAGCAGTTACAGgtatcttttcctcaaattcttattat--tttgcagcatctataaattcccta--ttttgaatctcttactatcttgctttct-taatatgtttgattttgtgtgtgtgtgtgtgtatgtggttcttag

upper sequence: AT2G01070.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA15G05370.1 (Glycine max), 5'ss of exon 2
AAGATCAAAACTTTTTCTTGTCCTTCCTGACGCCTTCCTCGATGCATTTCTCATATTGTGGATATTTACCTCTCTTTCGAAAACACTGGAACAGTTACAGgtatctctttct----ttctaaata-tagccatcagactctgtaagttgtaagggttttgaggcaagattcatcagaccagctataaaattctttattac-tgcag-----------
|||  |||  ||| |||| || |||||||| || ||| | ||||||||| | ||||| ||||| ||||| |||||||| | ||||||||| ||||||||||||||| || ||    |||  | || |   || || || || ||| || |  |  ||||||  |       |||        |  || ||| ||||||   ||              
AAGGGCAAGGCTTCTTCTAGTTCTTCCTGATGCTTTCTTAGATGCATTTTTGATATTATGGATTTTTACATCTCTTTCAAGAACACTGGAGCAGTTACAGgtatcttttcctcaaattcctattactttgcagcatac-ctataaattctctg--ttttgaatctcttactatcttgtttttt-caatattttttattttgtgtgtgtggttctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124826941|gb|EH911807.1|EH911807
EST:     TCATATTGTGGATATTTACCTCTCTTTCGAAAACACTGGAACAGTTACAG                         ATGAAAAGGACCTCGGTGAAGCTGGAAATTTACCGCAAGTTCTCAAATGCA
genomic: TCATATTGTGGATATTTACCTCTCTTTCGAAAACACTGGAACAGTTACAGgtatctcttt ... attactgcagATGAAAAGGACCTCGGTGAAGCTGGAAATTTACCGCAAGTTCTCAAATGCA