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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctctttctttctaaatatagccatcagactctgtaagttgtaagggttttgaggcaagattcatcagaccagctataaaattctttattactgcagATGAAAAGGACCTCGGTGAAGCTGGAAATTTACCGCAAGTTCTCAAATGCACTCGCTGTGATGGTTGTTGCCTCTGTTGCGTGGATAGTGTATGAG

Basic information

species Arabidopsis thaliana
transcript AT2G01070.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124826941|gb|EH911807.1|EH911807
EST:     TCATATTGTGGATATTTACCTCTCTTTCGAAAACACTGGAACAGTTACAG                         ATGAAAAGGACCTCGGTGAAGCTGGAAATTTACCGCAAGTTCTCAAATGCA
genomic: TCATATTGTGGATATTTACCTCTCTTTCGAAAACACTGGAACAGTTACAGgtatctcttt ... attactgcagATGAAAAGGACCTCGGTGAAGCTGGAAATTTACCGCAAGTTCTCAAATGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagggttttgaggcaagattcatcagaccagctataaaattctttattactgcagATGAAAAGGACCTCGGTGAAGCTGGAAATTTACCGCAAGTTCTCAAATGCACTCGCTGTGATGGTTGTTGCCTCTGTTGCGTGGATAGTGTATGAG
                                       ttctttatt  CT-rich tract
                                tataaaattctttatt  TA-rich tract