1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CAGAAACTTACTAACAAGATGTTTAGCTATAATCCCGAGTCTAATTGTTGCTCTCATCGGTGGTTCAGCTGGAGCTGGAAAGTTAATCATCATTGCCTCGgtactaaaatcatttctaactctagttatcatgtatacttatatatatgacttacttcatgaaatcaaatcatcatcttaaaacag
species | Arabidopsis thaliana |
transcript | AT1G80830.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CTCTCATCGGTGGTTCAGCTGGAGCTGGAAAGTTAATCATCATTGCCTCG ATGATCTTATCCTTTGAGCTCCCGTTTGCGTTGGTTCCTCTTCTAAAATTCEST: gi|116476122|gb|EG518714.1|EG518714
genomic: CTCTCATCGGTGGTTCAGCTGGAGCTGGAAAGTTAATCATCATTGCCTCGgtactaaaat ... cttaaaacagATGATCTTATCCTTTGAGCTCCCGTTTGCGTTGGTTCCTCTTCTCAAATTC
EST: CTCTCATCGGTGGTTCAGCTGGAGCTGGAAAGTTAATCATCATTGCCTCG ATGATCTTATCCTTTGAGCTCCCGTTTGCGTTGGTTCCTCTTCTCAAATTCEST: gi|116476120|gb|EG518712.1|EG518712
genomic: CTCTCATCGGTGGTTCAGCTGGAGCTGGAAAGTTAATCATCATTGCCTCGgtactaaaat ... cttaaaacagATGATCTTATCCTTTGAGCTCCCGTTTGCGTTGGTTCCTCTTCTCAAATTC
EST: CTCTCATCGGTGGTTCAGCTGGAGCTGGAAAGTTAATCATCATTGCCTCG ATGATCTTATCCTTTGAGCTCCCGTTTGCGTTGGTTCCTCTTCTCAAATTCEST: gi|124873543|gb|EH955188.1|EH955188
genomic: CTCTCATCGGTGGTTCAGCTGGAGCTGGAAAGTTAATCATCATTGCCTCGgtactaaaat ... cttaaaacagATGATCTTATCCTTTGAGCTCCCGTTTGCGTTGGTTCCTCTTCTCAAATTC
EST: CTCTCATCGGTGGTTCAGCTGGAGCTGGAAAGTTAATCATCATTGCCTCG ATGATCTTATCCTTTGAGCTCCCGTTTG
genomic: CTCTCATCGGTGGTTCAGCTGGAGCTGGAAAGTTAATCATCATTGCCTCGgtactaaaat ... cttaaaacagATGATCTTATCCTTTGAGCTCCCGTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGAAACTTACTAACAAGATGTTTAGCTATAATCCCGAGTCTAATTGTTGCTCTCATCGGTGGTTCAGCTGGAGCTGGAAAGTTAATCATCATTGCCTCGgtactaaaatcatttctaactctagttatcatgtatacttatatatatgacttacttcatgaaatcaaatcatcatcttaaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA