1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagctcactctctctcttcaccaccattcatcataagattctttgctgagaacaacatctgttctctgcagGCATAATCTCTTCCTCCACTCGGCCTTGGTTCTCTCGAGGAAAATCCCTCGTTCCGCTTCTGGTATCAAGGAAGCTTGCAGGTTTTACTTGATAGAAAGT
species | Arabidopsis thaliana |
transcript | AT1G80830.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AATGGTGCAACTGGTCTCGCAATCTCTTTGCTCGGAGCCATGGTTATGCC GCATAATCTCTTCCTCCACTCGGCCTTGGTTCTCTCGAGGAAAATCCCTCGEST: gi|116476122|gb|EG518714.1|EG518714
genomic: AATGGTGCAACTGGTCTCGCAATCTCTTTGCTCGGAGCCATGGTTATGCCgtaagctcac ... ttctctgcagGCATAATCTCTTCCTCCACTCGGCCTTGGTTCTCTCGAGGAAAATCCCTCG
EST: AATGGTGCAACTGGTCTCGCAATCTCTTTGCTCGGAGCCATGGTTATGCC GCATAATCTCTTCCTCCACTCGGTCTTGGTTCTCTCGAGGAAAATCCCTCGEST: gi|116476121|gb|EG518713.1|EG518713
genomic: AATGGTGCAACTGGTCTCGCAATCTCTTTGCTCGGAGCCATGGTTATGCCgtaagctcac ... ttctctgcagGCATAATCTCTTCCTCCACTCGGCCTTGGTTCTCTCGAGGAAAATCCCTCG
EST: AATGGTGCAACTGGTCTCGCAATCTCTTTGCTCGGAGCCATGGTTATGCC GCATAATCTCTTCCTCCACTCGGTCTTGGTTCTCTCGAGGAAAATCCCTCGEST: gi|116476120|gb|EG518712.1|EG518712
genomic: AATGGTGCAACTGGTCTCGCAATCTCTTTGCTCGGAGCCATGGTTATGCCgtaagctcac ... ttctctgcagGCATAATCTCTTCCTCCACTCGGCCTTGGTTCTCTCGAGGAAAATCCCTCG
EST: AATGGTGCAACTGGTCTCGCAATCTCTTTGCTCGGAGCCATGGTTATGCC GCATAATCTCTTCCTCCACTCGGCCTTGGTTCTCTCGAGGAAAATCCCTCG
genomic: AATGGTGCAACTGGTCTCGCAATCTCTTTGCTCGGAGCCATGGTTATGCCgtaagctcac ... ttctctgcagGCATAATCTCTTCCTCCACTCGGCCTTGGTTCTCTCGAGGAAAATCCCTCG
ttcaccaccattcatcataagattctttgctgagaacaacatctgttctctgcagGCATAATCTCTTCCTCCACTCGGCCTTGGTTCTCTCGAGGAAAATCCCTCGTTCCGCTTCTGGTATCAAGGAAGCTTGCAGGTTTTACTTGATAGAAAGT
tctgttctct CT-rich tract
ataagatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctcactctctctcttcaccaccattcatcataagattctttgctgagaacaacatctgttctctgcagGCATAATCTCTTCCTCCACTCGGCCTTGGTTCTCTCGAGGAAAATCCCTCGTTCCGCTTCTGGTATCAAGGAAGCTTGCAGGTTTTACTTGATAGAAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA