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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAGTAAGCGGGGCTGTTTGTAATGCCCCCAACTTAAGCCCTGAAGATCGAGCTAATTGTGAGGATTTGGACTTAAACAAGGCTTCGTTTCTGCTACGGgtaaattgtttgcttccttgttgttctgtttcttttccataacatttaagtgatgtctttcctctgttttcaaacag

Basic information

species Arabidopsis thaliana
transcript AT1G80830.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116476122|gb|EG518714.1|EG518714
EST:     GAGCTAATTGTGAGGATTTGGACTTAAACAAGGCTTCGTTTCTGCTACGG                         AACGTTGTGGGAAAATGGAGCTCAAAGCTATTTGCAATCGCGCTTCTTGCT
genomic: GAGCTAATTGTGAGGATTTGGACTTAAACAAGGCTTCGTTTCTGCTACGGgtaaattgtt ... tttcaaacagAACGTTGTGGGAAAATGGAGCTCAAAGCTATTTGCAATCGCGCTTCTTGCT
EST: gi|163983993|gb|ES163675.1|ES163675
EST:     GAGCTAATTGTGAGGATTTGGACTTAAACAAGGCTTCGTTTCTGCTACGG                         AACGTTGTGGGAAA-TGGA
genomic: GAGCTAATTGTGAGGATTTGGACTTAAACAAGGCTTCGTTTCTGCTACGGgtaaattgtt ... tttcaaacagAACGTTGTGGGAAAATGGA
EST: gi|116476120|gb|EG518712.1|EG518712
EST:     GAGCTAATTGTGAGGATTTGGACTTAAACAAGGCTTCGTTTCTGCTACGG                         AACGTTGTGGGAAAATGGAGCTCAAAGCTATTTGCAATCGCGCTTCTTGCT
genomic: GAGCTAATTGTGAGGATTTGGACTTAAACAAGGCTTCGTTTCTGCTACGGgtaaattgtt ... tttcaaacagAACGTTGTGGGAAAATGGAGCTCAAAGCTATTTGCAATCGCGCTTCTTGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCAGTAAGCGGGGCTGTTTGTAATGCCCCCAACTTAAGCCCTGAAGATCGAGCTAATTGTGAGGATTTGGACTTAAACAAGGCTTCGTTTCTGCTACGGgtaaattgtttgcttccttgttgttctgtttcttttccataacatttaagtgatgtctttcctctgttttcaaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT