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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgttttatattttcacattcaggtgtttgttttcctttgcttctcctatactggctcttaagtgtaaggacttttcttccttgaatttgcgctaaagGTTATTGATAATGACCGCGGAGTTCATATGAGGCCCATGCCTGGAATGCTTGGTTTAGTTTCCTCCAATTCCAAG

Basic information

species Arabidopsis thaliana
transcript AT1G75510.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G75510.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA04G03030.2 (Glycine max), 3'ss of exon 3
gtctgttttatattttcacattcaggtgtttgttttcctttgcttctcctatactggctcttaagtgtaaggacttttcttccttgaatttgcgctaaagGTTATTGATAATGACCGCGGAGTTCATATGAGGCCCATGCCTGGAATGCTTGGTTTAGTTTCCTCCAATTCCAAG
|| | | ||    |||   ||| |  | |   ||    |||  | ||      ||     | ||   |     || |   ||| |  ||        |||||||||||||||||||| |||||||  |||||||| |||||||||||| ||||| ||||||| |||||||| |||
gtatttgttcatgtttattatttaattatcccttaatgtttcttgctttctgtctatgattaaataattgattctctgggtcccttgatactattggaagGTTATTGATAATGACCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATTGGTCTAGTTTCATCCAATTCTAAG

upper sequence: AT1G75510.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA06G03070.1 (Glycine max), 3'ss of exon 3
gtctgttttatattttcacattcaggtgtttgttttcctttgcttctcctatactggctcttaagtgtaaggacttttcttccttgaatttgcgctaaagGTTATTGATAATGACCGCGGAGTTCATATGAGGCCCATGCCTGGAATGCTTGGTTTAGTTTCCTCCAATTCCAAG
|| |||||  |||||    || |      ||  | |   ||||||    | || ||     ||| ||  |  | ||   | |||||| ||       |||||||| |||||||| || |||||||  |||||||| |||||||||||| ||||| ||||||| ||||||||||||
gtatgtttattatttaattatcc-----cttaatgtttcttgctttctgtcta-tgataaataattg--attatttggttcccttga-ttcaattggaagGTTATCGATAATGATCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATTGGTCTAGTTTCATCCAATTCCAAG

upper sequence: AT1G75510.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv18s0001g13370.t01 (Vitis vinifera), 3'ss of exon 3
-------gtctgttttatattttca-cattcaggtgtttgttttcctttgcttctcctatactggctcttaagtgtaaggacttttcttccttgaatttgcgctaaagGTTATTGATAATGACCGCGGAGTTCATATGAGGCCCATGCCTGGAATGCTTGGTTTAGTTTCCTCCAATTCCAAG
        |||   ||  |||||   | ||  | | ||   ||  | ||  || |  |  |   | |  |||  || |    ||||  || || | ||      |||||| ||||| |||||||| ||||| ||||||||||| |||||||||||| ||||| |  || | |||||||| |||
gtagctcatctcacttgcatttttttccttttgttattacattggcattttttttgttgcatatgattataatggtcatttttttttctctttaatttattcaaaaagGTGATTGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGAATGGTTGGTCTGATTGCATCCAATTCTAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86078006|gb|DR373763.1|DR373763
EST:     TTTGTCGTGAGAGAACGAGCAAAGCCATGGTTAAAAATCGACAGATTCAG                         GTTATTGATAATGACCGCGGAGTTCATATGAGGCCCATGCCTGGAATGCTT
genomic: TTTGTCGTGAGAGAACGAGCAAAGCCATGGTTAAAAATCGACAGATTCAGgtctgtttta ... tgcgctaaagGTTATTGATAATGACCGCGGAGTTCATATGAGGCCCATGCCTGGAATGCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcctatactggctcttaagtgtaaggacttttcttccttgaatttgcgctaaagGTTATTGATAATGACCGCGGAGTTCATATGAGGCCCATGCCTGGAATGCTTGGTTTAGTTTCCTCCAATTCCAAG
                                      ttgaattt  TA-rich tract