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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTTCGTCGTCTTCTTCTTTTGCTTCCTCGGATTCTCCTCCCGACATGGCAAAGATTGTTCGCGAAGTTGATCCTCTACGGGACGATTCTCCCCCCGAGgtaatttggttcttaaattttgagttttagctcaaaccctagattgttgattgattagtccgtttttatgaaattgagtgttgaaattacattacttgtg...

Basic information

species Arabidopsis thaliana
transcript AT1G75510.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125000860|gb|EL073129.1|EL073129
EST:     CAAAGATTGTTCGCGAAGTTGATCCTCTACGGGACGATTCTCCCCCCGAG                         TTCAAAATGTATATGGTTGGTGCTGAGTATGGGAACATGCCAAAGTGCTAC
genomic: CAAAGATTGTTCGCGAAGTTGATCCTCTACGGGACGATTCTCCCCCCGAGgtaatttggt ... tattaatcagTTCAAAATGTATATGGTTGGTGCTGAGTATGGGAACATGCCAAAGTGCTAC
EST: gi|86036937|gb|DR332692.1|DR332692
EST:     CAAAGATTGTTCGCGAAGTTGATCCTCTACGGGACGATTCTCCCCCCGAG                         TTCAAAATGTATATGGTTGGTGCTGAGTATGGGAACATGCCAAAGTGCTAC
genomic: CAAAGATTGTTCGCGAAGTTGATCCTCTACGGGACGATTCTCCCCCCGAGgtaatttggt ... tattaatcagTTCAAAATGTATATGGTTGGTGCTGAGTATGGGAACATGCCAAAGTGCTAC
EST: gi|86036939|gb|DR332694.1|DR332694
EST:     CAAAGATTGTTCGCGAAGTTGATCCTCTACGGGACGATTCTCCCCCCGAG                         TTCAAAATGTATATGGTTGGTGCTGAGTATGGGAACATGCCAAAGTGCTAC
genomic: CAAAGATTGTTCGCGAAGTTGATCCTCTACGGGACGATTCTCCCCCCGAGgtaatttggt ... tattaatcagTTCAAAATGTATATGGTTGGTGCTGAGTATGGGAACATGCCAAAGTGCTAC
EST: gi|86036936|gb|DR332691.1|DR332691
EST:     CAAAGATTGTTCGCGAAGTTGATCCTCTACGGGACGATTCTCCCCCCGAG                         TTCAAAATGTATATGGTTGGTGCTGAGTATGGGAACATGCCAAAGTGCTAC
genomic: CAAAGATTGTTCGCGAAGTTGATCCTCTACGGGACGATTCTCCCCCCGAGgtaatttggt ... tattaatcagTTCAAAATGTATATGGTTGGTGCTGAGTATGGGAACATGCCAAAGTGCTAC