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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTGGTCTACACTAGCGAGGGATGTGCCTTTTGCTGGTCTTATGgtatgactatgtaatatggcacttcagtgaaactattacctccgttcaacttagggtctttgtctcctcatgttcggtctgtttttccattcag

Basic information

species Arabidopsis thaliana
transcript AT1G74240.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G74240.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os03g11510.1 (Oryza sativa), 5'ss of exon 6
ATATTGGTCTACACTAGCGAGGGATGTGCCTTTTGCTGGTCTTATGgta--tgactatgtaatatggcacttcagtgaaactattacctccgttcaacttagggtctttgtctcctcatgt--tcggtctgtttttccattcag--
||| ||||||||||| || |||||||| |||||||||||||||||||||  |||  |  | |  | ||||||   |   | | ||       ||  | |     | ||  | ||   | |   | ||| ||     |   ||    
ATACTGGTCTACACTTGCCAGGGATGTACCTTTTGCTGGTCTTATGgtaagtgagaaattcagcttgcacttttttctcattgttctagtaattttaatatacattttcatatctcaaagcaataggtttggggccctcctccttc