Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtaacttattttcaggctattatgatgtgaattggatacatcattctaattgttgactcgtgtcaagagacccatgttattattttcctttttcctgtggcagATATTGGTCTACACTAGCGAGGGATGTGCCTTTTGCTGGTCTTATG

Basic information

species Arabidopsis thaliana
transcript AT1G74240.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G74240.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: LOC_Os03g11510.1 (Oryza sativa), 3'ss of exon 5
gtatgtaacttattttcaggctattatgatgtgaattggat-acatcattctaattgttgactcgtgtcaagagacccatgttattattttcctttttcctgtggcagATATTGGTCTACACTAGCGAGGGATGTGCCTTTTGCTGGTCTTATG
  ||||||   |    ||  ||  ||  ||     |||  | |    |  ||| || |       |  |         |   |   |   || ||| || |    |||||| ||||||||||| || |||||||| ||||||||||||||||||
--atgtaa---agagacaaactgatactatccc--ttgcgtgatgataggctagttatcattcatttcctttttctttaaactgacacaatcttttgtcataca-cagATACTGGTCTACACTTGCCAGGGATGTACCTTTTGCTGGTCTTATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgttgactcgtgtcaagagacccatgttattattttcctttttcctgtggcagATATTGGTCTACACTAGCGAGGGATGTGCCTTTTGCTGGTCTTATG
                          tgttattattttcctt  CT-rich tract
                            ttattattttcctttt  TA-rich tract