Sequence
atgc intronic sequence ATGC exonic sequence...cacctggatcatgttttagtggcattgatttttcactttcatcggaatcgaatagttgcaagtggggtcaattagtctaacgttcaacacattgatgtagTTTGGAGAGAGTTCTTATGGGGAGGTATTGCTGGAGCTTTTGGAGAAGGAATGATGCATCCCGTTGATACTCTCAAAACTAGACTTCAAAGTCAAATTAT
Basic information
species | Arabidopsis thaliana |
transcript | AT1G74240.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G74240.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GRMZM2G094444_T02 (Zea mays), 3'ss of exon 1
cacctggatcatgttttagtggcattgatttttcactttcatcggaa----tcgaatagttgcaagtggggtca-----attagtctaacgttcaacacattgatgtagTTTGGAGAGAGTTCTTATGGGGAGGTATTGCTGGAGCTTTTGGAGAAGGAATGATGCATCCCGTTGATACTCTCAAAACTAGACTTCAAAGTCAAATTAT
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-------accataaat-agggacctgcatttgtatcagttaccaggaagtatagcacactttccagaatgtgcactgaaattatactgagacctaacttat-ggtgcagTGTGGAGAGAATTTGTCTGGGGAGGAATGGCAGGTGCATTTGGGGAAGGCATGATGCATCCAGTTGACACTCTGAAAACAAGGCTTCAGAGTCAAGCTAT
upper sequence: AT1G74240.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA04G32470.1 (Glycine max), 3'ss of exon 1
---cacctggatcatgttttagtggcattgatttttcactttcatcggaatcgaatagttgcaagtggggtcaattagtctaacgttcaacacattgatgtagTTTGGAGAGAGTTCTTATGGGGAGGTATTGCTGGAGCTTTTGGAGAAGGAATGATGCATCCCGTTGATACTCTCAAAACTAGACTTCAAAGTCAAATTAT
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cattttctcattcatccctccctaaca---aaactttattgtggcagaaaattgttcatttgtttttaaatttatgattagaactaatttgatattgttgaagTATGGAGAGAGTTTCTGTGGGGAGCTGTTGCGGGTGCATTTGGGGAAGGAATGATGCATCCAGTGGATACTGTTAAAACTCGATTACAAAGTCAAGCTATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19877640|gb|AU238471.1|AU238471EST: GAGTTTTCGTAAGAGCGTCGAAATCAAAGCCACGCATGATCAATTTTTCG TTTGGAGAGAGTTCTTATGGGGAGGTATTGCTGGAGCTTTTGGAGAAGGAA
genomic: GAGTTTTCGTAAGAGCGTCGAAATCAAAGCCACGCATGATCAATTTTTCGgtaagcgacg ... attgatgtagTTTGGAGAGAGTTCTTATGGGGAGGTATTGCTGGAGCTTTTGGAGAAGGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatcgaatagttgcaagtggggtcaattagtctaacgttcaacacattgatgtagTTTGGAGAGAGTTCTTATGGGGAGGTATTGCTGGAGCTTTTGGAGAAGGAATGATGCATCCCGTTGATACTCTCAAAACTAGACTTCAAAGTCAAATTAT
aatagtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cacctggatcatgttttagtggcattgatttttcactttcatcggaatcgaatagttgcaagtggggtcaattagtctaacgttcaacacattgatgtagTTTGGAGAGAGTTCTTATGGGGAGGTATTGCTGGAGCTTTTGGAGAAGGAATGATGCATCCCGTTGATACTCTCAAAACTAGACTTCAAAGTCAAATTAT
- - - - - - gttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcaacac